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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACATCATGGCTTTGGTTGGGTAGGGGAGTGGGCAAACACAGGgtaagtttttgaattagaaattgtacatttgtcccttctgtattttctgtgtttttaatcctttcagattttaaatacttgcttggttgaag

Basic information

species Glycine max
transcript GLYMA04G38370.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38370.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os05g35530.1 (Oryza sativa), 5'ss of exon 12
AGCACATCATGGCTTTGGTTGGGTAGGGGAGTGGGCAAACACAGGgtaagtttttgaattagaaattgtacatttgtcccttctgtattttctgtgtttttaatcctttcagatt-ttaaatacttgcttggttgaag
|||||| |||||||| |||||||| || ||||||||||| |||||||  || | |||  || |||   |     |     |   | |  |  |   | |      |  || |||| ||  || |              
AGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGGgtttgtgtctga-ctacaaacgttttgaataaaaatgaagaaactattacttctcagtgacaatctgattattctatgcag------------

upper sequence: GLYMA04G38370.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G097502_T01 (Zea mays), 5'ss of exon 10
AGCACATCATGGCTTTGGTTGGGTAGGGGAGTGGGCAAACACAGGgtaagtttttgaattagaaattgtacat-----ttgtcccttctgtattttct--gtgtttttaatcctttcagattttaaatacttgcttggttgaag------------------
 ||||| |||||||| |||||||| || ||||||||||| ||||||| ||  | || |  |   ||| ||||      |||      ||| | |||||  ||| | | |||       |||   |      ||  | | |||                    
GGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGGgttagcatctgtac-aatcattctacacagaaattgatgaaactgaagtttctcagtgatgtaaatggacattgatgaaactatgatgtgtcgctgacaatctcttttctaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193724995|gb|FK661023.1|FK661023
EST:     TTGGGTTAGGGGAGTGGGCAAACACAGG                         CTCTGAGGTAAGGAAGACCGGTGTAATGCGGATTGAGACATTCCATCATGC
genomic: TTGGG-TAGGGGAGTGGGCAAACACAGGgtaagttttt ... ttggttgaagCTCTGAGGTAAGGAAGACCGGTGTAATGCGGATTGAGACATTCCATCATGC
EST: gi|26059777|gb|CA802691.1|CA802691
EST:     AGCACATCATGGCTTTGGTTGGGTAGGGGAGTGGGCAAACACAGG                         CTCTGAGGTAAGGAAGACCGGTGTAATGCGGATTGAGACATTCCATCATGC
genomic: AGCACATCATGGCTTTGGTTGGGTAGGGGAGTGGGCAAACACAGGgtaagttttt ... ttggttgaagCTCTGAGGTAAGGAAGACCGGTGTAATGCGGATTGAGACATTCCATCATGC