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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAATTCTACAAATGGTTGCAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAGgttatttggaaacccttatgtaatactaatttgatataattatctgtgatttgaattctgagttcatctgattctttttgtttctaagagttgatatatctaatag

Basic information

species Glycine max
transcript GLYMA04G37810.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37810.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G459746_T01 (Zea mays), 5'ss of exon 13
TCAATTCTACAAATGGTTGCAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAGgttatttggaaacccttat-------gtaatactaatttgatataattatctgtgatttgaattctg---agttcatctgattctttttgtttctaaga-gttgatatatctaatag--------------------------------------------
                      || |||||||||||||||||||| |||||||| |||| | || ||   || || ||||||||  |  |||| |       |  |  ||       ||  ||||   ||||| |||  |  ||| |  |    | ||   |  | || ||  |       ||| ||    | | | |||||                                                  
----------------------AATAAATGTAATGTTGGCTATGCTTTCATCAACATGACCAATGCTCAGCATATCATTCCATTTTATCAGgtcagaaaattattccaattgacgaagtgctactgcattgatgtaa--agttgtaaactagcctttggtcaacttatatgccttgccaaatttgtactttgataaaatatccggcttgaacatcgacgtgctatcctgagccattttgtcatctttttcag

upper sequence: GLYMA04G37810.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G451716_T01 (Zea mays), 5'ss of exon 13
TCAATTCTACAAATGGTTGCAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAGgttatttggaaacccttatgtaatactaatttgatataattatctgtgatttgaattctgagttcatctgattctttttgtttctaagagttgatatatctaatag
                      || || || |||||||| |||||||||||||| |||||| ||||||   | ||| |||||||  | ||||| |  |   ||  | ||  ||| |  ||   ||   |  |||  |    | |      |  ||    | |    ||    | |  | | |||   |  | |  | 
----------------------AATAAGTGCAATGTTGGTTATGCATTCATCAACATGATCAATCCTGACAATATTGTTCCATTTTATAAGgtgagattctaaaacatacttaaaa--aaacagacgaacctatgaggagctagg---tagcattttattaagaaattaaactccccaaatttgtcttgacaagga-

upper sequence: GLYMA04G37810.1 (Glycine max), 5'ss of exon 11
lower sequence: EFJ28200 (Selaginella moellendorffii), 5'ss of exon 10
TCAATTCTACAAATGGTTGCAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAGgttatttggaaacccttatgtaatactaatttgatataattatctgtgatttgaattctgagttcatctgattctttttgtttctaagagttgatatatctaatag
                      |||||||| || |||||||||||||||||||| |||| ||| || |  || ||  | || ||  ||||||||   |   ||  ||   |     ||  ||     ||||  |   || |      |||| |    || |                                    
----------------------AACAAATGCAACGTTGGCTATGCATTCATCAACATGACCGAGCCAGCTCACATCGTCCCCTTTTACAAGgttcgatc--aattctctcgctcctctggtt----gtaatccttgttggt---ggctctgtgactttcag------------------------------------