Sequence
atgc intronic sequence ATGC exonic sequenceGCACAATCCAAGCATGAGCATTGGTCTTCTCTAGCTCCTCTTCCTTTTGAACTTGTCATCTCTGCTGGACAAAAGGCTAAGGAGGAATCCTGGAACAAAAgtacgagttggtactcaaaaaattcatttgaattatatatgtctgaaaattttcacaatgatgtctaattaaagtgcatggaccag
Basic information
species | Glycine max |
transcript | GLYMA04G37710.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G37710.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os01g70320.1 (Oryza sativa), 5'ss of exon 11
GCACAATCCAAGCATGAGCATTGGTCTTCTCTAGCTCCTCTTCCTTTTGAACTTGTCATCTCTGCTGGACAAAAGGCTAAGGAGGAATCCTGGAACAAAAgtacgagttggtactcaaaaaattca---tttgaattatatatgtctgaaaattttcacaatgatgtctaattaaagtgcatggaccag
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GCGGTATCAAAGCATGAACATTGGTCATCATTAGCTCCTCTTCCCCTTGAGGTTGTTCTCTCTGCTGGTCAAAAGGCTAAGGAGGAACCTCTCAAACAAGgcatgtctgcatctttataatatacaagttgtagatcgtagtttgttccatgtactc-cagttaattattcttggatcttttcaagcag
upper sequence: GLYMA04G37710.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv17s0000g00390.t01 (Vitis vinifera), 5'ss of exon 11
GCACAATCCAAGCATGAGCATTGGTCTTCTCTAGCTCCTCTTCCTTTTGAACTTGTCATCTCTGCTGGACAAAAGGCTAAGGAGGAATCCTGGAACAAAAgtacg---agttggta-ctcaaaaaattcatt--tgaattatatatgtctgaaaattttcacaatgatgtctaattaaagtgcatggaccag-------
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GCATTATCAAAGCATGAGCATTGGTCATCTTTAGCACCTTTGCCATTTGAAGTCGTCATTTCAGCTGGACAAAAGGCCAAGGAAGAGTCTTGGAATGGAGgttagtttacttgttggttttacaactttattcatgactgttgtttaagttttcttttcatcgcttgtatttcattatgcattctatgtcatcctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23064600|gb|BU579373.1|BU579373EST: ACTTGTCATCTCTGCTGGACAAAAGGCTAAGGAGGAATCCTGGAACAAAA GTGCTGATGGTCCAGATAGAAGCAAACTTGTTCGTGATTTGAATGATCTTG
genomic: ACTTGTCATCTCTGCTGGACAAAAGGCTAAGGAGGAATCCTGGAACAAAAgtacgagttg ... catggaccagGTGCTGATGGTCCAGATAGAAGCAAACTTGTTCGTGATTTGAATGATCTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCACAATCCAAGCATGAGCATTGGTCTTCTCTAGCTCCTCTTCCTTTTGAACTTGTCATCTCTGCTGGACAAAAGGCTAAGGAGGAATCCTGGAACAAAAgtacgagttggtactcaaaaaattcatttgaattatatatgtctgaaaattttcacaatgatgtctaattaaagtgcatggaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA