1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
TATTCGTATTGCTGGGGATGTCAAGCAGATTGATACACTTAAAGCCTGGAAAAGTGTAAATGAGGAGCACATTGCTAATCGGCTTCGTTACTCTTTACATgtatgcttgatttagaaaaatatggtgaagtggctgtgtgaggttgaattttttgagtctaatattctcatgttacacag
species | Glycine max |
transcript | GLYMA04G35870.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AAAGTGTAAATGAGGAGCACATTGCTAATCGGCTTCGTTACTCTTTACAT GTATATATGTCCATATTATACTTGAAGATACCAGAAAGTTTTCAAATGATAEST: gi|193324572|gb|FK292208.1|FK292208
genomic: AAAGTGTAAATGAGGAGCACATTGCTAATCGGCTTCGTTACTCTTTACATgtatgcttga ... tgttacacagGTATATATGTCCATATTATACTTGAAGATACCAGAAAGTTTTCAAATGATA
EST: AAAGTGTAAATGAGGAGCACATTGCTAATCGGCTTCGTTACTCTTTACAT GTATATATGTCCATATTATAEST: gi|193718007|gb|FK653349.1|FK653349
genomic: AAAGTGTAAATGAGGAGCACATTGCTAATCGGCTTCGTTACTCTTTACATgtatgcttga ... tgttacacagGTATATATGTCCATATTATA
EST: AAAGTGTAAATGAGGAGCACATTGCTAATCGGCTTCGTTACTCTTTACAT GTATATATGTCCATATTATAEST: gi|208096014|gb|GD892450.1|GD892450
genomic: AAAGTGTAAATGAGGAGCACATTGCTAATCGGCTTCGTTACTCTTTACATgtatgcttga ... tgttacacagGTATATATGTCCATATTATA
EST: CTTCGTTACTCTTTACTAT GTATATATGTCCATATTATACTTGAAGATACCAGAAAGTTTTCAAATGAT
genomic: CTTCGTTACTCTTTAC-ATgtatgcttga ... tgttacacagGTATATATGTCCATATTATACTTGAAGATACCAGAAAGTTTTCAAATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTCGTATTGCTGGGGATGTCAAGCAGATTGATACACTTAAAGCCTGGAAAAGTGTAAATGAGGAGCACATTGCTAATCGGCTTCGTTACTCTTTACATgtatgcttgatttagaaaaatatggtgaagtggctgtgtgaggttgaattttttgagtctaatattctcatgttacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA