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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGATATCCTATGGGATGCACTGTCTGGTCAAGAACACCTCCAACTCTTCGCTACTATTAAAGGCCTGTCCCCATCTTCCATAAAATCAgtatgtctgcacatgcctgaaattgttccatacaatcaatgattatgtgtgtgtgtgcaatatttgaaattattagctattatggatactgcctctcattccttttaattcaagttcttctgtaaaaatgtag

Basic information

species Glycine max
transcript GLYMA04G34140.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G34140.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G47730.1 (Arabidopsis thaliana), 5'ss of exon 11
TTTGATATCCTATGGGATGCACTGTCTGGTCAAGAACACCTCCAACTCTTCGCTACTATTAAAGGCCTGTCCCCATCTTCCATAAAATCAgtatgtctgcacatgcctgaaattgttccatacaatcaatgattatgtgtgt---gtgtgcaatatttgaaattattagctattatggatactgcctctcattccttttaattcaagttcttctgtaaaaatgtag
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TTTGATATTCTTTGGGATGCTTTGTCTGGTGAAGAACACCTCAAACTCTTTGCTAGCATCAAAGGGTTGCCACCTTCATCAATCAACTCGgtatgtacccaaatggtagaaatgagtcggttggttagtcggttggttacttcaaatcaagaatacttttcctcatttgtcgcttaaaatgttactttctcgtcatatag--------------------------