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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGTTCAAAGAAATGAAATTTATTGCTGAAAATAGGGCATCAATCACGTATGAATTACCATTAGCAGAGgtaatctcttgcattagttcttgtctattgaccctaaaaactcgtgcttctgtttaactagttttggctctcaagtatttgaatatttttgaatgtcaattttgtag

Basic information

species Glycine max
transcript GLYMA04G33480.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G33480.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 16
-----------------------------GGCAGTTCAAAGAAATGAAATTTATTGCTGAAAATAGGGCATCAATCACGTATGAATTACCATTAGCAGAGgtaatctcttgcattagttcttgtctattgaccctaa-aaact----cgtgctt--ctgtttaactagttttggctctc---aagtatttgaatatttttgaatgtcaattttgtag---------------------
                             |  ||||||||||||||||||||||  |||| ||||| |||||||| || ||||||||||| ||||||||||||   | |   |||   ||   || | |  |  | | |||||     |   ||  ||  | || || | |||| ||||   || | ||||  | ||  |  || | |||||| |                       
TCTCATGGAATTGGCTCAAGACCGTAGAGGAGAGTTCAAAGAAATGAAATTTATCACTGAGAATAGAGCATCAATTACCTATGAATTACCCTTAGCAGAGgtaccttttcctattcaatc--atccacttgctttgataaactgaaatgcagttgactagtaaattaatattgggtctccctaattttttggctgttgatagat-tgaattttctctggttttgaaattcattcacag