1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGAAGGTTTACCTCTGAGGAAGTCTGAGGAGGCTTTCTATCTAAACTGGGCTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttcacttctcatgtttcaatctttaataatgattacacaatcttatatattaatattaatatatcgtgatatttcacag
species | Glycine max |
transcript | GLYMA04G30350.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|208235227|gb|GE032045.1|GE032045
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttcacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|6454593|gb|AW185276.1|AW185276
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttcacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|209721377|gb|BW654573.1|BW654573
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttcacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|214006783|gb|DB988332.1|DB988332
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttcacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|105634473|gb|DW247563.1|DW247563
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttcacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|208324011|gb|GE121350.1|GE121350
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttcacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: GTTCACTCTATTTAGGATTAACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|254341544|gb|GR852681.1|GR852681
genomic: GTTCACTC-ATTTAGGATT-ACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttcacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|254341545|gb|GR852682.1|GR852682
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttcacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|193686481|gb|FK626868.1|FK626868
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttcacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|151406914|gb|EV276729.1|EV276729
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttcacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: AGGATTACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|22931658|gb|BU548797.1|BU548797
genomic: AGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttcacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|22927399|gb|BU544538.1|BU544538
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttcacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACNNNG ATTCACACTCACATGTGNNACTCCAACTTCAATGACATCATTCACTCAANN
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttcacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGGTTTACCTCTGAGGAAGTCTGAGGAGGCTTTCTATCTAAACTGGGCTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttcacttctcatgtttcaatctttaataatgattacacaatcttatatattaatattaatatatcgtgatatttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA