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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAGAAGTAAGGAATGTTCGTGGTAATACACAGAAGAAGATTGAAAAGCTGAGACAACTACTTTCTGGTCTTCTTAGTGAACTTACCTATTTTGATGAGgtaaatatctcacatgaagctgtatcgtagtttattattttcatcttttactttacccttttagttaatgatgcatcttgaagaaactatttatttccaataattatatctagcaaattcttagaaggttcttcaactgtatgtttattgttgctttatttcacttgtag

Basic information

species Glycine max
transcript GLYMA04G10090.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G10090.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv01s0127g00430.t01 (Vitis vinifera), 5'ss of exon 11
TAGAGAAGTAAGGAATGTTCGTGGTAATACACAGAAGAAGATTGAAAAGCTGAGACAACTACTTTCTGGTCTTCTTAGTGAACTTACCTATTTTGATGAGgtaaatatctcacatgaagctgtatcgtagtttattattttcatcttttactttacccttttagttaatgatgcatcttgaagaaactatttatttccaataattatatctagcaaattcttagaaggttcttcaactgtatgtttattgttgctttatttcacttgtag
 ||||| ||||| | ||| ||||||   || |||||||| ||||||||||| ||||| || |||||||| ||||||||||| |||||||||||||| ||||||  | | | |    ||| ||  |  |  | |  |  | |  |   || ||   |  | |  |  | | ||   | ||| |     |||   ||||  ||       | || ||  | |||  ||   | |  || |  |  | | |  ||| ||| || |||||  ||
GAGAGATGTAAGAACTGTGCGTGGTGGAACCCAGAAGAAAATTGAAAAGCTTAGACAGCTTCTTTCTGGCCTTCTTAGTGAGCTTACCTATTTTGAAGAGgtatttgtttgattcaaagttgactattgatcttgtcatctgctaactttctgagctttgtctgacatttattt-tgttgcatcggatatagctttcagat-------tgtaacagttgcttttaaatatttataatttgagatgtgt--ttgatttgttacactttcag

upper sequence: GLYMA04G10090.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S58_188V6.1 (Physcomitrella patens), 5'ss of exon 11
TAGAGAAGTAAGGAATGTTCGTGGTAATACACAGAAGAAGATTGAAAAGCTGAGACAACTACTTTCTGGTCTTCTTAGTGAACTTACCTATTTTGATGAGgtaaatatc-tcacatgaagctgtatcgtagtttattattttcatcttttactttacccttttagttaatgatgcatcttgaagaaactatttatttccaataattatatctagcaaattcttagaaggttcttcaactgtatgtttattgttgctttatttcacttgtag
  |||| || | ||||||||| |||   || || ||||| ||||| || ||  | || ||||| || || |||||||||||||| ||||||||||||||||||  ||   ||  ||  |   | || |||      | |  |||| | ||     | | | |||  | ||  ||  ||||    ||    |||||||  || || |  || || || | |  |      |    ||                                   
GCGAGAGGTCAAGAATGTTCGGGGTTCGACCCAAAAGAAAATTGAGAAACTTCGGCAGCTACTATCAGGCCTTCTTAGTGAACTGACCTATTTTGATGAGgtatgtactgtcctatttatgcgaatggta------tgtactcatatgttg----aacttgtta--tgattgtgtgtctttgttaa--cgtttattt--aaaaagttcatttaacatagtggttcgcattgtggcag----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208229018|gb|GE025222.1|GE025222
EST:     TGAGACAACTACTTTCTGGTCTTCTTAGTGAACTTACCTATTTTGATGAG                         CCAATACGATCACCTTTGGCACCAGGTGTCCTCATTGCTGGAATTGTACCT
genomic: TGAGACAACTACTTTCTGGTCTTCTTAGTGAACTTACCTATTTTGATGAGgtaaatatct ... tcacttgtagCCAATACGATCACCTTTGGCACCAGGTGTCCTCATTGCTGGAATTGTACCT
EST: gi|208295183|gb|GE096416.1|GE096416
EST:     TGAGACAACTACTTTCTGGTCTTCTTAGTGAACTTACCTATTTTGATGAG                         CCAATACGATCACCTTTGGCACCAGGTGTCCTCATTGCTGGAAT
genomic: TGAGACAACTACTTTCTGGTCTTCTTAGTGAACTTACCTATTTTGATGAGgtaaatatct ... tcacttgtagCCAATACGATCACCTTTGGCACCAGGTGTCCTCATTGCTGGAAT
EST: gi|193542812|gb|FK504133.1|FK504133
EST:     TGAGACAACTACTTTCTGGTCTTCTTAGTGAACTTACCTATTTTGATGAG                         CCAATACGATCACCTTTGGCACCAGGTGTCCTCATTGCTGGAATTGTACCT
genomic: TGAGACAACTACTTTCTGGTCTTCTTAGTGAACTTACCTATTTTGATGAGgtaaatatct ... tcacttgtagCCAATACGATCACCTTTGGCACCAGGTGTCCTCATTGCTGGAATTGTACCT