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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCACTTTGCAAGGAAGGATAAGATTCCCATCAATCTTAAATATATAGgtcagtttctcttacagcattctcttcctttttgacctatttatttcttggtctttcatttttatttcggatttcaaaggttttttaaaatttgacaattatctaattttaaccaagttatctacatcgtgggataaggctttgttgttgttgtatctgccag

Basic information

species Glycine max
transcript GLYMA04G09180.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207836632|gb|GD806629.1|GD806629
EST:     TCACTTTGCAAGGAAGGATTAAGTATTCCCCATCAATCTTAAATATATAG                         ATCCAACTTACAT
genomic: TCACTTTGCAAGGAAGGAT-AAG-ATTCCC-ATCAATCTTAAATATATAGgtcagtttct ... tatctgccagATCCAACTTACAT
EST: gi|193473086|gb|FK436675.1|FK436675
EST:     CACTTTGTTCTAAGGTAAGGATAAGATTCCCATCAATCTTAAATATATAG                         ATCCAACTTACATGATCCGGGCAATCCAAAGCAATGCATCAGATAATGTCT
genomic: CACTTTG--C-AAGG-AAGGATAAGATTCCCATCAATCTTAAATATATAGgtcagtttct ... tatctgccagATCCAACTTACATGATCCGGGCAATCCAAAGCAATGCATCAGATAATGTCT
EST: gi|207767243|gb|GD739655.1|GD739655
EST:     GATCACTTTGCAAGGAAGGATAAGATTCCCATCAATACTTAAATATATAG                         ATCCAACTTACATGATCCGGGCAATCCAAAGCAATGCATCAGATAATGTCT
genomic: GATCACTTTGCAAGGAAGGATAAGATTCCCATCAAT-CTTAAATATATAGgtcagtttct ... tatctgccagATCCAACTTACATGATCCGGGCAATCCAAAGCAATGCATCAGATAATGTCT
EST: gi|193437677|gb|FK403516.1|FK403516
EST:     AAGGATAAGATTCCCATCAATCTTAAATATATAG                         ATCCAACTTACATGATCCGGGCAATCCAAAGCAATGCATCAGATAATGTCT
genomic: AAGGATAAGATTCCCATCAATCTTAAATATATAGgtcagtttct ... tatctgccagATCCAACTTACATGATCCGGGCAATCCAAAGCAATGCATCAGATAATGTCT
EST: gi|193309643|gb|FK276717.1|FK276717
EST:     GATCACTTTGCAAGGAAGGATAAGATTCCCATCAATCTTAAATATATAG                         ATCCAACTTACATGA
genomic: GATCACTTTGCAAGGAAGGATAAGATTCCCATCAATCTTAAATATATAGgtcagtttct ... tatctgccagATCCAACTTACATGA
EST: gi|193403000|gb|FK366496.1|FK366496
EST:     GATCACTTTGCAAGGAAGGATAAGATTCCCATCAATCTTAAATATATAG                         ATCCAACTTACATGATCCGGGCAATCCAAAGCAATGCATCAGATAATGTCT
genomic: GATCACTTTGCAAGGAAGGATAAGATTCCCATCAATCTTAAATATATAGgtcagtttct ... tatctgccagATCCAACTTACATGATCCGGGCAATCCAAAGCAATGCATCAGATAATGTCT
EST: gi|193363314|gb|FK328350.1|FK328350
EST:     GATCACTTTGCAAGGAAGGATAAGATTCCCATCAATCTTAAATATATAG                         ATCCAACTTACATGATCCGGGCAATCCAAAGCAATGCATCAGATAATGTCT
genomic: GATCACTTTGCAAGGAAGGATAAGATTCCCATCAATCTTAAATATATAGgtcagtttct ... tatctgccagATCCAACTTACATGATCCGGGCAATCCAAAGCAATGCATCAGATAATGTCT
EST: gi|208318731|gb|GE111170.1|GE111170
EST:     GATCACTTTGCAAGGAAGGATAAGATTCCCATCAATCTTAAATATATAG                         ATCCAACTTACAT
genomic: GATCACTTTGCAAGGAAGGATAAGATTCCCATCAATCTTAAATATATAGgtcagtttct ... tatctgccagATCCAACTTACAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATCACTTTGCAAGGAAGGATAAGATTCCCATCAATCTTAAATATATAGgtcagtttctcttacagcattctcttcctttttgacctatttatttcttggtctttcatttttatttcggatttcaaaggttttttaaaatttgacaattatctaattttaaccaagttatctacatcgtgggataaggctttgttgttgttgtatctgccag

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