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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCGCAGAACTTGTTTTTGCTCCAATCGATGCATCTTTCTCTGATGATGCGCCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACAgtaagtctattagctagcatatagtttgattgtattgtttttgaaattggttgtttaagtaaggattttgattttctgttttctgttatattgttggtctcttatagtgatatgatatgatgcag

Basic information

species Glycine max
transcript GLYMA04G09000.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G09000.1 (Glycine max), 5'ss of exon 11
lower sequence: AT4G32880.1 (Arabidopsis thaliana), 5'ss of exon 15
CAGCGCAGAACTTGTTTTTGCTCCAATCGATGCATCTTTCTCTGATGATGCGCCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACAgtaagtctattagctagcatatagtttgattgtattgtttttgaaattggttgtttaagtaaggattttgattttctgttttctgttatattgttggtctcttatagtgatatgatatgatgcag
  ||||||| ||| | ||||| |||||||| |||||||||||||||||||| || ||  | ||||| ||||| |||||||| ||||| |||||     ||||| ||   | |  |   |||    |  |    |||   |||  | |||     | || ||   ||||  |  |    || | | |                                       
ATGCGCAGAGCTTATATTTGCACCAATCGACGCATCTTTCTCTGATGATGCACCAATCATTCCTTCCGGTTTCCGCATCATTCCTCTAGATTCCAAATCAgtacgt---tcaattcatataacaatcaaaatcattaacttt--agttgaa---tcaaatactaatttataaatcgaattatgtatag-------------------------------------

upper sequence: GLYMA04G09000.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv04s0008g03250.t01 (Vitis vinifera), 5'ss of exon 14
CAGCGCAGAACTTGTTTTTGCTCCAATCGATGCATCTTTCTCTGATGATGCGCCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACAgtaagtctattagctagcatatagtttgattgtattgtttttgaaattggttgtttaagtaaggattttgattttctgttttctgttatattgttggtctcttatagtgatatgatatgatgcag
| |  | |||||  | ||||||||||| ||||| ||||||||||||||||| ||  || | |||||||||||||| || || || |||||||||||    |||||| | |        || | || |   |||||  | |    |  |   ||||| | || || | |||  | |   || | |  |      |    |                          
CTGTTCTGAACTCATCTTTGCTCCAATTGATGCCTCTTTCTCTGATGATGCACCTCTTCTTCCTTCTGGTTTTCGAATTATTCCCCTTGATTCTGGGGTGgtaagtattt--------attttgtct---tgtataatctacacatgtatgtgttttatta-ggttcttgcctcttcattctgtactgctacatgatgcag------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8286050|gb|BE023538.1|BE023538
EST:     CGCCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACA                         GATGCTGCTAGTCCAAACCGTACACTTGATCTGGCTTCTGCACTTGAAGTT
genomic: CGCCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACAgtaagtctat ... tatgatgcagGATGCTGCTAGTCCAAACCGTACACTTGATCTGGCTTCTGCACTTGAAGTT
EST: gi|19452311|gb|BM953721.1|BM953721
EST:     CGCCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACA                         GATGCTGCTAGTCCAAACCGTACACTTGATCTGGCTTCTGCACTTGAAGTT
genomic: CGCCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACAgtaagtctat ... tatgatgcagGATGCTGCTAGTCCAAACCGTACACTTGATCTGGCTTCTGCACTTGAAGTT
EST: gi|19934805|gb|BQ079835.1|BQ079835
EST:     CGCCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACA                         AATGCTGCTAGTCCA
genomic: CGCCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACAgtaagtctat ... tatgatgcagGATGCTGCTAGTCCA