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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTATCAAGCAGATTGGAATGTTTACTTTCACTGGATTGAATGCGGAACAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATCTGACGGgtaagatactctatttattatgacttcattgaatgagttcaaatgaatatgacatgcattctcttttttttctccgtgttctatgctctagtcaattgtg...

Basic information

species Glycine max
transcript GLYMA04G08560.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G08560.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S132_95V6.1 (Physcomitrella patens), 5'ss of exon 12
ACATTATCAAGCAGATTGGAATGTTTACTTTCACTGGATTGAATGCGGAACAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATCTGACGGgta----agatactctatttattatgacttcattgaatgagttcaaatgaatatgacatgcattctcttttt--tttctccgtgttcta-tgctctagtcaattgtg
|| || | ||||||||||||||||| |||||||| ||||||||   |   |||||    ||||||||     | || || || |||||||| || || |||||    | | |    |||||| |  |  || |  ||| | ||      | || ||  |||  ||    |||   ||   | ||| | | || | |    | | |  
ACGTTCTGAAGCAGATTGGAATGTTCACTTTCACGGGATTGAACAAGTCTCAAGTCGAGTTCATGACCCGTCAATATCACATCTACATGACCTCAGATGGgtacataaaacatcacatttatcacta--tcctgaaattatttt---ccactacgatctgcgatccaaatttggctttcacctgtacaagtgatttttgtactag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306581|gb|FG996243.1|FG996243
EST:     CAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATCTGACGG                         GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTAGCGGA
genomic: CAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATCTGACGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTAGCGGA
EST: gi|20812962|gb|BQ297440.1|BQ297440
EST:     CAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATCTGACGG                         GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTAGCGGA
genomic: CAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATCTGACGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTAGCGGA
EST: gi|9901743|gb|BE610711.1|BE610711
EST:     CAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATCTGACGG                         GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTAGCGGA
genomic: CAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATCTGACGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTAGCGGA
EST: gi|13481430|gb|BG510773.1|BG510773
EST:     CAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATCTGACGG                         GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTAGCGGA
genomic: CAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATCTGACGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTAGCGGA
EST: gi|192328739|gb|FK023197.1|FK023197
EST:     CAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATCTGACGG                         GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTAGCGGA
genomic: CAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATCTGACGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTAGCGGA
EST: gi|22932102|gb|BU549241.1|BU549241
EST:     CAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATCTGACGG                         GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTAGCGGA
genomic: CAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATCTGACGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTAGCGGA
EST: gi|192334120|gb|FK026277.1|FK026277
EST:     CAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATCTGACGG                         GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTAGCGGA
genomic: CAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATCTGACGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTAGCGGA
EST: gi|254322787|gb|GR839808.1|GR839808
EST:     CAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATCTGACGG                         GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTAGCGGA
genomic: CAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATCTGACGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTAGCGGA