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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCTTTTTGCCGTAATGTTTGGTGACTGGGGGCATGGCATATGCTTATTACTGGCGGCTTTGTATTTAATGATCAGAGAGAGAAAATTTGCTAGTCAGgtacttaactcatgatcatggggtatttgtattgaatctgaatgttcccttctatattatttttaag

Basic information

species Glycine max
transcript GLYMA04G03010.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G03010.1 (Glycine max), 5'ss of exon 11
lower sequence: AT4G39080.1 (Arabidopsis thaliana), 5'ss of exon 11
ATTCCTTTTTGCCGTAATGTTTGGTGACTGGGGGCATGGCATATGCTTATTACTGGCGGCTTTGTATTTAATGATCAGAGAGAGAAAATTTGCTAGTCAGgtactta-actcatgatcatgggg--tatttgtattgaatctgaatgttcccttctatattatttttaag------------------------------
 |||||||| || || ||||||||||| ||||||||||| |||||| |  | || ||  || |||| || ||  | | ||| |  ||| |||| || |||||| | | ||||    | |||     ||   || || |  |   |  ||    ||| | | ||    |                                
CTTCCTTTTCGCTGTTATGTTTGGTGATTGGGGGCATGGAATATGCATTCTGCTTGCAACTATGTACTTGATATTGAAAGAAAAGAAACTTGCCAGCCAGgtaataatactccaactgatgtcacttacgagtgttaacacgcgagattgaaatctgtctcatcagcagaacttgcttataatttagctgtttgttttac

upper sequence: GLYMA04G03010.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv18s0001g13410.t01 (Vitis vinifera), 5'ss of exon 11
ATTCCTTTTTGCCGTAATGTTTGGTGACTGGGGGCATGGCATATGCTTATTACTGGCGGCTTTGTATTTAATGATCAGAGAGAGAAAATTTGCTAGTCAGgtacttaactcatgatcatggggtatttgtattgaatctga-atgttccctt----ctatattatttttaag----------------------------
 ||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||  | || ||||| ||  |||  || |  |||||| ||||||||||| |   | |  |||  | |    ||     | |   ||| ||||| | |      ||||   | | ||                              
TTTCCTTTTTGCTGTAATGTTTGGTGATTGGGGCCATGGAATATGCTTATTACTTGCAACCTTATATTTCATTGTCAAGGAAAAGAAATTTTCTAGTCAGgtaatgtccactggattcttgctggttaactataagcttgatatgtttcgtggaaattatagagtctatatctctcatattagtacatgcagtcataata