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AACTTGTCTGGGTATGATGAATATGTTCCAATGGTAGACATACCTGTTGATGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAGgttagtgacttatggcctagtatttattgatgtactcttttgatgaatcctctcattatttgcttattcattgaaaatttacccagttgcacaaatgctt...
species | Glycine max |
transcript | GLYMA04G01220.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGCTGG-TGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAG GAGCACCTCCTCCTGACACTCAGAAAACTCCTGAAGGGATTCAAGCTCGGAEST: gi|298191514|gb|HO038993.1|HO038993
genomic: TGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAGgttagtgact ... ttcaatacagGAGCACCTCCTCCTGACACTCAGAAAACTCCTGAAGGGATTCAAGCTCGGA
EST: TGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAG GAGCACCTCCTCCTGACACTCAGAAAACTCCTGAAGGGATTCAAGCTCGGAEST: gi|16348272|gb|BI973867.1|BI973867
genomic: TGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAGgttagtgact ... ttcaatacagGAGCACCTCCTCCTGACACTCAGAAAACTCCTGAAGGGATTCAAGCTCGGA
EST: TGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAG GAGCACCTCCTCCTGACACTCAGAAAACTCCTGAAGGGATTCAAGCTCGGA
genomic: TGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAGgttagtgact ... ttcaatacagGAGCACCTCCTCCTGACACTCAGAAAACTCCTGAAGGGATTCAAGCTCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTTGTCTGGGTATGATGAATATGTTCCAATGGTAGACATACCTGTTGATGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAGgttagtgacttatggcctagtatttattgatgtactcttttgatgaatcctctcattatttgcttattcattgaaaatttacccagttgcacaaatgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctctc