1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
ATGACATGGAAATAGCACCTGATTTCTTTGATTATTTTGAAGCTGCAGCGAGTCTCCTTGAGAAGGATAAgtatgtgttctagaagcgcagaatgctgaatttattttcttttgattcactgcactagttttttaagactccggaatctctgttgttaatatttctattctag
species | Glycine max |
transcript | GLYMA04G00200.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GATTTCTTTGATTATTTTGAAGCTGCAGCGAGTCTCCTTGAGAAGGATAA ATCCATTATGGCTGTTTCCTCATGGAATGACAATGGACAAAAGCAGTTTGTEST: gi|192297484|gb|FG989519.1|FG989519
genomic: GATTTCTTTGATTATTTTGAAGCTGCAGCGAGTCTCCTTGAGAAGGATAAgtatgtgttc ... tctattctagATCCATTATGGCTGTTTCCTCATGGAATGACAATGGACAAAAGCAGTTTGT
EST: GATTTCTTTGATTATTTTGAAGCTGCAGCGAGTCTCCTTGAGAAG-ATAA ATCCATTATGGCTGTTTCCTCATGGAATGACA-TGGACAAAAGCAGTTTGTEST: gi|14011124|gb|BG726055.1|BG726055
genomic: GATTTCTTTGATTATTTTGAAGCTGCAGCGAGTCTCCTTGAGAAGGATAAgtatgtgttc ... tctattctagATCCATTATGGCTGTTTCCTCATGGAATGACAATGGACAAAAGCAGTTTGT
EST: GATTTCTTTGATTATTTTGAAGCTGCAGCGAGTCTCCTTGAGAAGGATAA ATCCATTATGGCTGTTTCCTCATGGAATGACAATGGACAAAAGCAGTTTGT
genomic: GATTTCTTTGATTATTTTGAAGCTGCAGCGAGTCTCCTTGAGAAGGATAAgtatgtgttc ... tctattctagATCCATTATGGCTGTTTCCTCATGGAATGACAATGGACAAAAGCAGTTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGACATGGAAATAGCACCTGATTTCTTTGATTATTTTGAAGCTGCAGCGAGTCTCCTTGAGAAGGATAAgtatgtgttctagaagcgcagaatgctgaatttattttcttttgattcactgcactagttttttaagactccggaatctctgttgttaatatttctattctag
- - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - CTGCAG