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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCAAATGGAAATCCTCACCATTCAGATTCGTTGCATTACATTGATGCATATGGCCGGTTAAATTCATACCAAAAGgtaaccttgatatctactacttgtcaatgaatgatatatgattctgagcttttcaatcattaacttatgaaacacaataaggtcctgactaacttcaatagtgggggtggcattatctgatccattgtttttgcctaattaacacaatatttatttgtag

Basic information

species Glycine max
transcript GLYMA03G40220.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 5'ss of exon 11
CTTCAAATGGAAATCCTCACCATTCAGATTCGTTGCATTACATTGATGCATATGGCCGGTTAAATTCATACCAAAAGgtaac-cttgatatctactacttgtcaatgaatgat-atatgattctgagcttttcaatcattaacttatgaaacac-aataaggtcctgactaacttcaatagtgggggtggcattatctgatccattgtttttgcctaattaacacaatatttatttgtag
||||||||||||||||||   || ||||||| ||||| ||||||||| | | ||||||||| ||| | |||||| ||||||  |||   |||||| | | ||     | |||  ||       | |  | |     || || |   ||    ||   |   |  |||  | |    ||                                                              
CTTCAAATGGAAATCCTCGAAATCCAGATTCTTTGCACTACATTGATCCTTCTGGCCGGTTCAATGCTTACCAACAGgtaaggcttcccatctaccattagtgttcaattgaagatgctcacttaaattgtgttcccactatccagtggtttactggtggagatctg-ttgatggaaa--------------------------------------------------------------

upper sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv14s0030g00600.t01 (Vitis vinifera), 5'ss of exon 9
CTTCAAATGGAAATCCTCACCATTCAGATTCGTTGCATTACATTGATGCATATGGCCGGTTAAATTCATACCAAAAGgtaac-cttgatatctactacttgtcaatgaatgat-atatgattctgagcttttcaatcattaacttatgaaacac-aataaggtcctgactaacttcaatagtgggggtggcattatctgatccattgtttttgcctaattaacacaatatttatttgtag
||||||||||||||||||    | ||||||| ||||| ||||||||| | | ||||||||| ||| | |||||| ||||||  |||   |||||| | | ||     | |||  ||     | | |  | |     || || |   ||    ||   |   |  |||  | |    ||                                                              
CTTCAAATGGAAATCCTCGAACTCCAGATTCTTTGCACTACATTGATCCTTCTGGCCGGTTCAATGCTTACCAACAGgtaaggcttcccatctaccattagtgctcaattgaagatgctcatttaaattgtgttcccactatccagtggtttactggtggagatctg-ttgatggaaa--------------------------------------------------------------