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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAAGGAAGCAATTTTCAGAACTCTAATTAGGAATGGCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAGgtttttctctctctcatttatcatttcagctaagtaatttctccaaagctaataattcatcaaattctgttccatctatcagtcacataacaatgctcag...

Basic information

species Glycine max
transcript GLYMA03G40000.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40000.2 (Glycine max), 5'ss of exon 11
lower sequence: AT3G05190.1 (Arabidopsis thaliana), 5'ss of exon 11
ATTAAGGAAGCAATTTTCAGAACTCTAATTAGGAATGGCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAGgtttttct-ctctctcatttatcatttcagctaagtaatttctcca---aagctaataattcatcaaattctgttccatctatcagtcacataacaatgctcag
 | || |||||||| ||||||||||| || |  ||||| |||||||||||| |||| ||| || | |||||||| ||||| |||||||| ||||  || |||     | |  || |   || |  | | | ||   |  | | | |||  || ||      |    | |   ||  | | |          
GTAAAAGAAGCAATCTTCAGAACTCTTATAACCAATGGTATGTTTGACAATACACATATCAGGTTGTCTCTAACTCGAGGCAAAAAGgtatttcaactttcttcgacaccgatttaagaaacttctgttttcatttagaccattgattagtctaaagaaaattgtgcaacttgtttctttaag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205448|gb|BU964701.1|BU964701
EST:     GCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAG                         GTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATT
genomic: GCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAGgtttttctct ... gtttctctagGTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATT
EST: gi|17021927|gb|BM092961.1|BM092961
EST:     GCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAG                         GTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATT
genomic: GCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAGgtttttctct ... gtttctctagGTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATT
EST: gi|6724770|gb|AW309169.1|AW309169
EST:     GCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAG                         GTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATT
genomic: GCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAGgtttttctct ... gtttctctagGTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATT