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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCTgtgagtacatttgacttcttagcaggcctttctaactctaatttcaatccacctaatttgcaaaatggagctgtactgtactgctcatgtaatgattgtttctccgcctttgaagctttatataatgtgttttttactttatcttgtgcag

Basic information

species Glycine max
transcript GLYMA03G38850.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G38850.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 11
ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCTgtgagtacatttgacttcttagcaggcctttctaactctaatttcaatccacctaatttgcaaaatggagctgtactgtactgctcatgtaatgattgtttctccgcctttgaagctttatataatgtgttttttactttatcttgtgcag
|| || || || |||||||||||||||||||||||| |||| ||||||||||| || ||||| |||||  | |||||||| ||||||||||||||  | || ||    ||  | ||  | || | | |        ||   ||      ||  |||||          || || | | |   ||||| |    || |   |                                  
ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacatt-aatttttt----ggtttctcataatccattcttgtgtgttctgtctttt----tgttgctgt---------ttcctgcatttaaaatttcttcaagattaacaatc---------------------------------

upper sequence: GLYMA03G38850.2 (Glycine max), 5'ss of exon 11
lower sequence: PP1S60_85V6.1 (Physcomitrella patens), 5'ss of exon 10
ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCTgtgagtacatttgacttcttagcag----gcctttctaactctaatttcaatccacc------------taatttgcaaaa-----tggagctgtactgtactgctcatgtaatgattgtttctccgcctttgaagctttatataatg-tgttttttactttatcttg---tgcag
|| || ||||| |||||||| |||||||| || || ||||| |||||||| ||||| ||||| || ||  |||| |||| |||||||||||   || ||||     |||    |    |   | | | || |   |    |            | ||||  ||       || | | | |   ||| | |   ||       | | || |      || | || |||||| | | ||    |  |  | ||    |||||
ATATTCCACAAACGCATGCCACCAGAAGCAGTCGACCTGGTTTCAAGACTTCTACAGTACTCTCCAAATCTGCGATGCAATGCTgtgagta-gcttcacttacagacagttgggtgcgttggattgtgatgtttgtgtggcgttcgcgaggcatgattttaaagcgagcttgcaacggcagcataccgatgcagttgaatacgatactgcattgcggatgattgatataacgatattaagaaagtggtttttatttgcag

upper sequence: GLYMA03G38850.2 (Glycine max), 5'ss of exon 11
lower sequence: PP1S60_100V6.1 (Physcomitrella patens), 5'ss of exon 10
ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCTgtgagtacatttgacttcttagcag----gcctttctaactctaatttcaatccacctaatttgcaaaatggagctgtactgtactgctcatgtaatgattgtttctc--cgcctttgaa----gctttatataatgtgttttttactttatcttgtgcag--------------------
 | || || || |||||||| |||||||| || || ||||| |||||||| ||||| ||||| || ||  |||| |||| |||||||||||   || ||||     |||    |    |   | | | || |   |    |   ||||| |   ||     |  |  |  |    || || ||  |  | ||   ||  |||||        |   |      |  || || | |   | |  ||                    
GTATTCCATAAACGCATGCCACCAGAAGCAGTCGACCTGGTTTCAAGACTTCTACAGTACTCTCCAAATCTGCGATGCAATGCTgtgagta-gcttcacttacagacagttgggtgcgttggattgtgatgtttgtgtggc--gtttgcga---ggcatgattttaaagcgagtttgcaacgacagcatatcgatgcagttgaatacgatactgcgttgcagatgattgacatgacgatattaagcaagtggttgttatttgcag

upper sequence: GLYMA03G38850.2 (Glycine max), 5'ss of exon 11
lower sequence: PP1S74_168V6.1 (Physcomitrella patens), 5'ss of exon 9
ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCTgtgagtacatttgacttcttagcaggcctttctaactctaatttcaatccacctaatttgcaaaatggagctgtactgtactgctcatgtaatgattgtttctccgcctttgaagctttatataatgtgttttttactttatcttgtgcag
 | || ||||||||||||||||||||||| || |||||||| ||||| ||||| || ||||| || ||  ||||||||| ||||||||||      |   | ||        | |  |    | ||  |      | |  || |  |    ||    | || | ||  |  ||  |  |   | |                                                  
GTTTTCCACAAGCGCATGCCTCCAGAAGCAGTAGATCTGGTTTCAAGGCTACTTCAGTACTCTCCGAATCTGCGGTGCAATGCTgtgagtgatgacggggtttttctg---ttgtgaagtgttgatcgcgcagaccatcgttggttacgatgaatctttctct-ctattggtgggaacaggatgttga-----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296807|gb|FG993105.1|FG993105
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCT                         TTAGATACCTTGACCCATCCNNNNNNNGATGAACTTCGTGACCCAAGCACT
genomic: ATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCTgtgagtacat ... tcttgtgcagTTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
EST: gi|15285595|gb|BI469486.1|BI469486
EST:     ATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCT                         TTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
genomic: ATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCTgtgagtacat ... tcttgtgcagTTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
EST: gi|21888144|gb|BQ741366.1|BQ741366
EST:     ATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCT                         TTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
genomic: ATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCTgtgagtacat ... tcttgtgcagTTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
EST: gi|19054267|gb|BM732934.1|BM732934
EST:     ATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCT                         TTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
genomic: ATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCTgtgagtacat ... tcttgtgcagTTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
EST: gi|22931093|gb|BU548232.1|BU548232
EST:     ATCTGGTATCAAGACTACTACAATACTCCCCTAANNNGCGGTGCACTGCT                         TTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
genomic: ATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCTgtgagtacat ... tcttgtgcagTTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
EST: gi|21994002|gb|BQ785530.1|BQ785530
EST:     ATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCT                         TTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
genomic: ATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCTgtgagtacat ... tcttgtgcagTTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT