1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAAACGAGATGAATGCATTCAGATCATACACACTTGGGATGAATTTGTGCAAGCTTTGAACCAAAGAAAAATGATCTTTGCTCCTTGGTGTGACGAGGAGgtatttttgttcaaatataatgttcctgatgtcttgatatgttttgatttttaaggcacttgtttgagtattatactattgtcactctttgaatgagatc...
species | Glycine max |
transcript | GLYMA03G38340.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AAGCTTTGAACCAAAGAAAAATGATCTTTGCTCCTTGGTGTGACGAGGAG GAGGTGGAGGCTGATGTCAAAGCCAGGACAAAGGGTGAGATGGGAGCAGCTEST: gi|208035639|gb|GD837320.1|GD837320
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTTGCTCCTTGGTGTGACGAGGAGgtatttttgt ... aatgctttagGAGGTGGAGGCTGATGTCAAAGCCAGGACAAAGGGTGAGATGGGAGCAGCT
EST: TGTGACGAGGAG GAGGTGGAGGCTGATGTCAAAGCCAGGACAAAGGGTGAGATGGGAGCAGCTEST: gi|213587445|gb|DB979065.1|DB979065
genomic: TGTGACGAGGAGgtatttttgt ... aatgctttagGAGGTGGAGGCTGATGTCAAAGCCAGGACAAAGGGTGAGATGGGAGCAGCT
EST: AAGCTTTGAACCAAAGAAAAATGATCTTTGCTCCTTGGTGTGACGAGGAG GAGGTGGAGGCTGATGTCAAAGCCAGGACAAAGGGTGAGATGGGAGCAGCTEST: gi|209724629|gb|BW677722.1|BW677722
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTTGCTCCTTGGTGTGACGAGGAGgtatttttgt ... aatgctttagGAGGTGGAGGCTGATGTCAAAGCCAGGACAAAGGGTGAGATGGGAGCAGCT
EST: AAGCTTTGAACCAAAGAAAAATGATCTTTGCTCCTTGGTGTGACGAGGAG GAGGTGGAGGCTGATGTCAAAGCCAGGACAAAGGGTGAGATGGGAGCAGCTEST: gi|214006980|gb|DB988431.1|DB988431
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTTGCTCCTTGGTGTGACGAGGAGgtatttttgt ... aatgctttagGAGGTGGAGGCTGATGTCAAAGCCAGGACAAAGGGTGAGATGGGAGCAGCT
EST: AGCTGAT-AACCAAAGAAAAATGATCTTTGCTCCTTGGTGTGACGAGGAG GAGGTGGAGGCTGATGTCAAAGCCAGGACAAAGGGTGAGATGGGAGCAGCTEST: gi|208023799|gb|GD824689.1|GD824689
genomic: AGCT-TTGAACCAAAGAAAAATGATCTTTGCTCCTTGGTGTGACGAGGAGgtatttttgt ... aatgctttagGAGGTGGAGGCTGATGTCAAAGCCAGGACAAAGGGTGAGATGGGAGCAGCT
EST: AAGCTTTGAACCAAAGAAAAATGATCTTTGCTCCTTGGTGTGACGAGGAG GAGGTGGAGGCTGATGTCAAAGCCAGGACAAAGGEST: gi|15814951|gb|BI787226.1|BI787226
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTTGCTCCTTGGTGTGACGAGGAGgtatttttgt ... aatgctttagGAGGTGGAGGCTGATGTCAAAGCCAGGACAAAGG
EST: AAGCTTTGAACCAAAGAAAAATGATCTTTGCTCCTTGGTGTGACGAGGAG GAGGTGGAGGTTGATGTCAAAGCCAGGACAAAGGGTGAGATGGGAGCAGTTEST: gi|193469538|gb|FK435926.1|FK435926
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTTGCTCCTTGGTGTGACGAGGAGgtatttttgt ... aatgctttagGAGGTGGAGGCTGATGTCAAAGCCAGGACAAAGGGTGAGATGGGAGCAGCT
EST: TCTTTGCTCCTTGGTGTGACGAGGAG GAGGTGGAGGCTGATGTCAAAGCCAGGACAAAGGGTGAGATGGGAGCAGCTEST: gi|192304984|gb|FG996116.1|FG996116
genomic: TCTTTGCTCCTTGGTGTGACGAGGAGgtatttttgt ... aatgctttagGAGGTGGAGGCTGATGTCAAAGCCAGGACAAAGGGTGAGATGGGAGCAGCT
EST: AAGCTTTGAACCAAAGAAAAATGATCTTTGCTCCTTGGTGTGACGAGGAG GAGGTGGAGGCTGATGTCAAAGCCAGGACAAAGGGTGAGATGGGAGCAGCT
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTTGCTCCTTGGTGTGACGAGGAGgtatttttgt ... aatgctttagGAGGTGGAGGCTGATGTCAAAGCCAGGACAAAGGGTGAGATGGGAGCAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAACGAGATGAATGCATTCAGATCATACACACTTGGGATGAATTTGTGCAAGCTTTGAACCAAAGAAAAATGATCTTTGCTCCTTGGTGTGACGAGGAGgtatttttgttcaaatataatgttcctgatgtcttgatatgttttgatttttaaggcacttgtttgagtattatactattgtcactctttgaatgagatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG