1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGCTGAAAAGTATTTTAAAAGAGGTACACGATTAAGTTGGCCTGATAGTTCAACTTCAAGAGAAAGCATGAGAGCAGTTTGGAAATTGCCACGGTTGCCGgtattacttactttgtggttgcctgtattttcatattcacataattatttcatgtgtattatttataagaatacagttctatgtcctgttgatatttttc...
species | Glycine max |
transcript | GLYMA03G33100.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CAACTTCAAGAGAAAGCATGAGAGCAGTTTGGAAATTGCCACGGTTGCCG AACCTCATAATGCAGCATGTTGATCATTCTGCTGGCGATTTGATTGACCTCEST: gi|192305976|gb|FG996492.1|FG996492
genomic: CAACTTCAAGAGAAAGCATGAGAGCAGTTTGGAAATTGCCACGGTTGCCGgtattactta ... tcccctgcagAACCTCATAATGCAGCATGTTGATCATTCTGCTGGCGATTTGATTGACCTC
EST: CAACTTCAAGAGAAAGCATGAGAGCAGTTTGGAAATTGCCACGGTTGCCG AACCTCATAATGCAGCATGTTGATCATTTTGCTGGCGATTTGATTGACCTCEST: gi|22931038|gb|BU548177.1|BU548177
genomic: CAACTTCAAGAGAAAGCATGAGAGCAGTTTGGAAATTGCCACGGTTGCCGgtattactta ... tcccctgcagAACCTCATAATGCAGCATGTTGATCATTCTGCTGGCGATTTGATTGACCTC
EST: CAACTTCAAGAGAAAGCATGAGAGCAGTTTGGAAATTGCCACGGTTGCCG AACCTCATAATGCAGCATGTTGATCATTCTGCTGGCGATTTGATTGACCTCEST: gi|192302498|gb|FG994820.1|FG994820
genomic: CAACTTCAAGAGAAAGCATGAGAGCAGTTTGGAAATTGCCACGGTTGCCGgtattactta ... tcccctgcagAACCTCATAATGCAGCATGTTGATCATTCTGCTGGCGATTTGATTGACCTC
EST: CAACTTCAAGAGAAAGCATGAGAGCAGTTTGGAAATTGCCACGGTTGCCG AACCTCATAATGCAGCATGTTGATCATTCTGCTGGCGATTTGATTGACCTC
genomic: CAACTTCAAGAGAAAGCATGAGAGCAGTTTGGAAATTGCCACGGTTGCCGgtattactta ... tcccctgcagAACCTCATAATGCAGCATGTTGATCATTCTGCTGGCGATTTGATTGACCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGAAAAGTATTTTAAAAGAGGTACACGATTAAGTTGGCCTGATAGTTCAACTTCAAGAGAAAGCATGAGAGCAGTTTGGAAATTGCCACGGTTGCCGgtattacttactttgtggttgcctgtattttcatattcacataattatttcatgtgtattatttataagaatacagttctatgtcctgttgatatttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG