Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAATGCAAAGCTGGCAGCTGCTGAGGAAGCCCTGTCATTATCAGTATGGACAATGGCAACTACTTGTCGAGTTCTGTCCCTTGATAGTgtaagcacatattccagttgacattcaacagtgttaatgtttgtctgaactcagaagttctttatagaaaccatttcctgcaagcagaaaatcttttaaa...

Basic information

species Glycine max
transcript GLYMA03G32580.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G32580.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv07s0005g04510.t01 (Vitis vinifera), 5'ss of exon 9
GACAATGCAAAGCTGGCAGCTGCTGAGGAAGCCCTGTCATTATCAGTATGGACAATGGCAACTACTTGTCGAGTTCTGTCCCTTGATAGTgtaagcacatattccagttgacattcaacagtgttaatgtttgtctg-aactcagaagttctttatagaaaccatttcctgcaagcagaaaatcttttaaa------------
| |||||  ||| | || |||||||||||||| ||  || ||||| |||||||||  |||||   |||||||||||| |||||||| |||||||     | || ||       |  | ||   |  | | ||||||  || |||| |||  | | |      ||| | ||  ||| ||    ||| ||||             
GCCAATGTCAAGTTAGCTGCTGCTGAGGAAGCTCTTGCACTATCAATATGGACAACAGCAACAGTTTGTCGAGTTCTCTCCCTTGAAAGTgtaa---tgtttttcac------tctagcatcat--aggcttgtcttcaattcagtagta-tctgtttctttcatctgctctaagtagttc-tctattaatgaagttcttatc