Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   
14  
 5'  3'   
15  
 5'  3'   
16  
 5'  3'   
17  
 5'  3'   
18  
 5'  3'   
19  
 5'  3'   
20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTTCTGGCCTACAGGATTCCGGCCACATACTTGAGGAAGGGAAAAGCATATATAACACAACTTTGAATATGTCTGATTTGTCTACTGGTACTAACAGgtgggttcattatgttttaacttccttttcttggtatatacaaaaaagcctttttattttaattgtgatttgtttttatttacttggtgaatctctcacatcacttcctttcttaagattcttgctttgctgtcctaactttttcttcccatgtaaag

Basic information

species Glycine max
transcript GLYMA03G31820.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G31820.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv07s0005g03040.t01 (Vitis vinifera), 5'ss of exon 10
AGGCTTCTGGCCTACAGGATTCCGGCCACATACTTGAGGAAGGGAAAAGCATATATAACACAACTTTGAATATGTCTGATTTGTCTACTGGTACTAACAGgtgggttcattatgttttaacttccttttcttggtatatacaaaaaagcctttttattttaattgtgatttgtttttatttacttggtgaatctctca-catcacttcctttcttaagattcttgctttgctgtcctaactttttcttcccatgtaaag
| ||||||||||| || ||||| || || || |||||||| ||||||||||| ||||| ||||||||||||||||||||| |||| |||||| |||||||||| || | | | || | || |||| | | || | | | | ||| | || | | | ||| | || ||| |||| ||| | | | |
AAGCTTCTGGCCTGCAAGATTCAGGTCATATCCTTGAGGATGGGAAAAGCATCTATAATACAACTTTGAATATGTCTGATCTGTCAACTGGTGTTAACAGgtggatttagtttattccatttttctttcc--agcattt------caacatatttttggtagcctttcctggatttaaaccacc--gtgcatctttcagtgttattctat-------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7684852|gb|AW755500.1|AW755500
EST:     ATATATAACACAACTTTGAATATGTCTGATTTGTCTACTGGTACTAACAG                         CTACTACATTCTCCAGATAATCGAGGAAGATA-GGGGTCCG
genomic: ATATATAACACAACTTTGAATATGTCTGATTTGTCTACTGGTACTAACAGgtgggttcat ... ccatgtaaagCTACTACATTCTCCAGATAATCGAGGAAGATAAGGGGTCCG