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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGAAGATGCAATGGTCTATAGAAGACCCTATCTTACATCTGGTTCCTCTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAGgtgaaaatttacgtatattgaatcggttcaactggcttacatgtattttctcttgcataatgaaagtatggataatgagcaagtcatcaattagtttaccgcacgtggaatttctgtagtgtatagaattttgcttttctatgatctaataaggtggtgtttgtttgattcactcttccgctag

Basic information

species Glycine max
transcript GLYMA03G23870.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G23870.1 (Glycine max), 5'ss of exon 11
lower sequence: AT4G12830.1 (Arabidopsis thaliana), 5'ss of exon 11
AGAAGAAGATGCAATGGTCTATAGAAGACCCTATCTTACATCTGGTTCCTCTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAGgtgaaaattta-cgtatattgaatcggttcaactggcttacatgtattttctcttgcataatgaaagtatggataatgagcaagtcatcaattagtttacc-gcacgtggaatttctgtagtgtatagaattttgcttttctatgatctaataaggtggtgtttgtttgattcactcttccgctag
|||||| ||||||||||| ||| ||||||| |||||||| || ||||| ||||| ||||| || ||||| || ||||||  |||||| ||||| || |||||    ||  | | | | ||   ||  |   |||| |  | ||  |  ||         | |  |  | | || |||  |||  |||| |     |||||| |||                                                                                 
AGAAGACGATGCAATGGTTTATCGAAGACCTTATCTTACCTCAGGTTCTTCTGGTTTTGCACTTAATGCCATAAGCAGGTCCATGAAGAAAGAACTTAAGgttctcataaagcctctctttcttcattcatactgtcaaaaatcaagatttca------agttgatatctagagaattggcatttcattagaacttttacctgcag--------------------------------------------------------------------------------

upper sequence: GLYMA03G23870.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv07s0151g00860.t01 (Vitis vinifera), 5'ss of exon 11
AGAAGAAGATGCAATGGTCTATAGAAGACCCTATCTTACATCTGGTTCCTCTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAGgtgaaaatttacgtatattgaatcggttcaactggcttacatgtattttctcttgcataatgaaagtatggataatgagcaagtcatcaattagtttaccgcacgtggaatttctgtagtgtatagaattttgcttttctatgatctaataaggtggtgtttgtttgattcactcttccgctag
||| || ||||||||||| ||||||||||| |||||||||||||||||||| || |||||  ||||||||||||| |||| |||||| || || || ||||||||||||| |||   ||   | | |  ||    | ||    |  | |   || | |  |      | |  |  |       ||||||  |    |    ||                                                                                 
AGAGGATGATGCAATGGTGTATAGAAGACCTTATCTTACATCTGGTTCCTCAGGTTTTGCATTAAATGCAATTAGTAGGAGCATGAAGAAGGAGCTAAAGgtgaaaattttcgttcttt---ttgttctaaacttcctattgatcatgttattttcctttttcctcca-gacttctacttctatcatcacctctgctttaacaa--------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13125744|gb|BG316314.1|BG316314
EST:     CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAG                         AGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
genomic: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAGgtgaaaattt ... cttccgctagAGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
EST: gi|31311135|gb|CD396338.1|CD396338
EST:     CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAG                         AGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
genomic: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAGgtgaaaattt ... cttccgctagAGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
EST: gi|27425710|gb|CA937230.1|CA937230
EST:     CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAG                         AGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
genomic: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAGgtgaaaattt ... cttccgctagAGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
EST: gi|31456481|gb|CD398509.1|CD398509
EST:     CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAG                         AGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
genomic: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAGgtgaaaattt ... cttccgctagAGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
EST: gi|22525661|gb|BU084472.1|BU084472
EST:     CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAG                         AGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
genomic: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAGgtgaaaattt ... cttccgctagAGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
EST: gi|22932756|gb|BU549895.1|BU549895
EST:     CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAG                         AGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
genomic: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAGgtgaaaattt ... cttccgctagAGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
EST: gi|15287093|gb|BI470984.1|BI470984
EST:     CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAG                         AGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
genomic: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAGgtgaaaattt ... cttccgctagAGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT