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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCAATTGCTACGAGCTCCTCATGATGATGCTGATTTAATTATAAAGGAGAGATTTCCTGTACCTCGCCTGGTTGTTTGTGATCAGCATGGCTCTCAGgttactttctattccttcttgccattgatcatctggtaatacaatagagttgacctgcttgctactgttttttttcttctttgctacgaactaattaccc...

Basic information

species Glycine max
transcript GLYMA03G22740.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G22740.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 13
TGCTCAATTGCTACGAGCTCCTCATGATGATGCTGATTTAATTATAAAGGAGAGATTTCCTGTACCTCGCCTGGTTGTTTGTGATCAGCATGGCTCTCAGgttactttctattccttcttgccattgatcatctggtaatacaatagagttgacctgcttgctactgttttttttcttctttgctacgaactaattaccc---
||| || ||||| || ||||| |  ||||||||||||  ||| || || || || ||||||||||||||| | ||  |||||||||||||||| || ||||||  |   | |||    ||       ||  |       ||||| |  |      |   |  || || ||| ||  |  | ||  | |  ||  ||| |    
TGCCCAGTTGCTGCGGGCTCCACGAGATGATGCTGATGCAATAATTAAAGAAAGGTTTCCTGTACCTCGCTTAGTCATTTGTGATCAGCATGGATCCCAGgttgataattcttcgcctttctgcacaattgttaaac--tacaaaaatgcaattataaataatattggtttgttcttaatctgg-atggtctctttaacaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209704574|gb|BW673386.1|BW673386
EST:     AGAGATTTCCTGTACCTCGCCTGGTTGTTTGTGATCAGCATGGCTCTCAG                         GCTCGATTTTTACTGGCAAAGTTAAACCCTTCTGCTACTTATAACACTGAA
genomic: AGAGATTTCCTGTACCTCGCCTGGTTGTTTGTGATCAGCATGGCTCTCAGgttactttct ... tcatgtgcagGCTCGATTTTTACTGGCAAAGTTAAACCCTTCTGCTACTTATAACACTGAA
EST: gi|12690334|gb|BG156670.1|BG156670
EST:     AGAGATTTCCTGTACCTCGCCTGGTTGTTTGTGATCAGCATGGCTCTCAG                         GCTCGATTTTTACTGGCAAAGTTAAACCCTTCTGCTACTTATAACACTGAA
genomic: AGAGATTTCCTGTACCTCGCCTGGTTGTTTGTGATCAGCATGGCTCTCAGgttactttct ... tcatgtgcagGCTCGATTTTTACTGGCAAAGTTAAACCCTTCTGCTACTTATAACACTGAA
EST: gi|209718658|gb|BW674758.1|BW674758
EST:     AGAGATTTCCTGTACCTCGCCTGGTTGTTTGTGATCAGCATGGCTCTCAG                         GCTCGATTTTTACTGGCAAAGTTAAACCCTTCTGCTACTTATAACACTGAA
genomic: AGAGATTTCCTGTACCTCGCCTGGTTGTTTGTGATCAGCATGGCTCTCAGgttactttct ... tcatgtgcagGCTCGATTTTTACTGGCAAAGTTAAACCCTTCTGCTACTTATAACACTGAA