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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGGAGCGACACTCATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAGgttagtgtagcctgtatgatacatttccaaatggatattatgtgtagtagtttacttttaagatggctgccgttgtgattcaacatttatgttaagtatt...

Basic information

species Glycine max
transcript GLYMA03G07890.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 5'ss of exon 11
GTGGGGAGCGACACTCATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAGgttagtgtagcctgtatgatacatttccaaatggatattatgtgtagtagtttactttta-agatggctgccgttgtgattcaacatttatgt-taagtatt--
 |||||||| || || ||||||||||| || |||||||| || || |||||||||||||| || |||| ||| |  |  || |  | | | | |   || || |  || |    |||  ||| | | | | || |   | |        |  |||||||  |   |||  
ATGGGGAGCTACTCTAATGAACTCTTTCCTCTTCAATGTCGGCCTCATTCTTCTTTGTTCAATCAGgtaagtctctctggtctc-ttcttctgcctttgtatctgttgggatcaagtgcactctgataaacggatctagatcaagc---atgtttatgtgcatacattaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18730359|gb|BM525833.1|BM525833
EST:     ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAG                         TGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
genomic: ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAGgttagtgtag ... accttttcagTGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
EST: gi|58025422|gb|CX712163.1|CX712163
EST:     ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAG                         TGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
genomic: ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAGgttagtgtag ... accttttcagTGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
EST: gi|58015128|gb|CX701870.1|CX701870
EST:     ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAG                         TGTGATCCAGTTTTGCTCCACAGCATTTGCNTACTATGCTCAAGCAACTGC
genomic: ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAGgttagtgtag ... accttttcagTGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
EST: gi|192326624|gb|FK018496.1|FK018496
EST:     ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAG                         TGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
genomic: ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAGgttagtgtag ... accttttcagTGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC