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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTCAAGATACCACGTCTATTTGATCCTTGGGGTGGTTACAGTATCATCGGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAGgtagaattggaagtcataatacatacctctcctactcatcttcgacttccttgtattactgattttttggtgatagaatacctgaccacattgtttccttgtaaaatgttttagatagatggaaagggtaatggtctttcatcatgttaacagttcatggacttattctattgataactaactttacag

Basic information

species Glycine max
transcript GLYMA03G01100.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01100.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G01650.1 (Arabidopsis thaliana), 5'ss of exon 11
TTCTCAAGATACCACGTCTATTTGATCCTTGGGGTGGTTACAGTATCATCGGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAGgtagaattggaagtcataatacatacctctcctactcatcttcgacttccttgtattactgattttttggtgatagaatacctgaccacattgtttccttgtaaaatgttttagatagatggaaagggtaatggtctttcatcatgttaacagttcatggacttattctattgataactaactttacag
| || ||||| |||||  | ||||||||||||||||| ||||| || || |||||||| ||||| ||||||||||||||  | ||  | ||  |||| ||||    ||| |     |  ||||  |  ||| | | | |||   || |  ||    ||   |  | |     |      | ||||    |||     | |  |||| || | | ||                                                                         
TACTAAAGATCCCACGAATGTTTGATCCTTGGGGTGGCTACAGCATAATTGGATTTGGTGACATTATCTTACCAGGACTGCTTGTAACTTTCGCACTGAGgt----ttgcac----tgttacaatctcctcttgcgc-tctctcacattattactatatcaagatctcaacta------aactgagt-tattagaagcatacaaaa-gtatgaaatg------------------------------------------------------------------------

upper sequence: GLYMA03G01100.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv15s0046g02460.t01 (Vitis vinifera), 5'ss of exon 11
TTCTCAAGATACCACGTCTATTTGATCCTTGGGGTGGTTACAGTATCATCGGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAGgtagaattggaagtcataatacatacctctcct-actcatcttcgacttccttg---tattactgattttttggtgatagaatacct-gaccacattgtttccttgtaaaatgttttagatagatggaaagggtaatggtctttcatcatgttaacagttcatggacttattctattgataactaactttacag
| || ||||| || ||  | ||||||||||||||||| ||||| ||||| |||||||| || || |||||||| |||||  | |||||||| ||||||||||   ||     || |||||   ||  |      |   ||| || | ||  |     ||  | || ||||||      | | || || || | |||| |                                                                                               
TACTGAAGATCCCGCGAATGTTTGATCCTTGGGGTGGCTACAGCATCATTGGATTTGGTGATATTATCTTACCGGGACTGCTTGTGGCATTCTCACTAAGgtttgatcact-gtaataatctttattttcaaagaagtatcgtcaattttgtgaacttaacattgctttttttcccccaaattatctagagcccattttgg---------------------------------------------------------------------------------------------

upper sequence: GLYMA03G01100.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S1_478V6.1 (Physcomitrella patens), 5'ss of exon 11
TTCTCAAGATACCACGTCTATTTGATCCTTGGGGTGGTTACAGTATCATCGGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAGgtagaattggaagtcataatacatacctctcctactcatcttcgacttccttgtattactgattttttggtgatagaatacctgaccacattgtttccttgtaaaatgttttagatagatggaaagggtaatggtctttcatcatgttaacagttcatggacttattctattgataactaactttacag
| || ||  | ||| |  | | |||||||||||| |||||||||||||| || ||||| |||||  |  | |||||  |  | ||  | || |   || ||||    | ||  |  ||||       |   | |    || |    ||  ||  |||  |  | | ||||   ||      ||  |  |       | |  | | | |                                                                                 
TGCTGAAAGTTCCAAGGTTGTATGATCCTTGGGGAGGTTACAGTATCATTGGCTTTGGTGACATCCTACTCCCAGGGTTGCTTGTCTCCTTCTGCTTACGgtacg--ttgagattttaattttactttagtcgatgagtcgtgaggtttgttagatttgtagtgtattgggttta------ctagcttcgcgcagccatgatgacacg---------------------------------------------------------------------------------

upper sequence: GLYMA03G01100.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S124_16V6.1 (Physcomitrella patens), 5'ss of exon 11
TTCTCAAGATACCACGTCTATTTGATCCTTGGGGTGGTTACAGTATCATCGGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAGgtagaattggaagtcataatacatacctctcctactcatcttcgacttccttgtattactgattttttggtgatagaatacctgaccacattgtttccttgtaaaatgttttagatagatggaaagggtaatggtctttcatcatgttaacagttcatggacttattctattgataactaactttacag
|||| ||  | |||||||| |||||||| |||||||| ||||||||||| || ||||| || ||  |  | ||||||||| | ||  | || |   || ||||              | | ||||  |||          ||    ||  |  |   |  || |        ||| ||| || |   ||||| | ||| ||| |   |  || | |  | |                                                                    
TTCTTAAAGTTCCACGTCTTTTTGATCCATGGGGTGGCTACAGTATCATTGGTTTTGGCGATATTTTGCTTCCAGGACTTTTGGTTTCCTTCTGCTTACGgta----------ctccactgcatatttct----------ttgtggttgttactgccatcgagtgg--aagaataaaatgccagttaacattttgtccatgtgatgcgagtttgtttaaagt-------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26059236|gb|CA802150.1|CA802150
EST:     GGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAG                         GTATGATTGGTTGGCAAAGAAGAACCTTCGGGCTGGATACTTCTTGTGGGC
genomic: GGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAGgtagaattgg ... aactttacagGTATGATTGGTTGGCAAAGAAGAACCTTCGGGCTGGATACTTCTTGTGGGC
EST: gi|151409520|gb|EV279328.1|EV279328
EST:     GGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAG                         GTATGATTGGTTGGCAAAGAAGAACCTTCGGGCTGGATACTTCTTGTGGGC
genomic: GGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAGgtagaattgg ... aactttacagGTATGATTGGTTGGCAAAGAAGAACCTTCGGGCTGGATACTTCTTGTGGGC
EST: gi|254319501|gb|GR829013.1|GR829013
EST:     GGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAG                         GTATGATTGGTTGGCAAAGAAGAACCTTCGGGCTGGATACTTCTTGTGGGC
genomic: GGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAGgtagaattgg ... aactttacagGTATGATTGGTTGGCAAAGAAGAACCTTCGGGCTGGATACTTCTTGTGGGC