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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAGCATGATGTTGAGCAATTACTGGTATCACTTATTTTGGATAACAGAATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGATCTGATAGgtgagtttttatgttgaattcttttttactggatttagtttgttcgtataaaacctcgtatctttattaacattctaaatacatttccag

Basic information

species Glycine max
transcript GLYMA03G00670.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G00670.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv08s0040g00430.t01 (Vitis vinifera), 5'ss of exon 11
CTGAGCATGATGTTGAGCAATTACTGGTATCACTTATTTTGGATAACAGAATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGATCTGATAGgtgagtttttatgttgaattcttttttactggatttagtttgttcgtataaaacctcgtatctttattaacattctaaatacatt-tccag
| ||| | |||||||||||  |  |||| || || |||||||||||| |||||||||| || ||||||||||| |||||  | ||||| ||   ||| ||||    ||| ||      || ||||||  | ||||   | ||||  | |   | |    || ||  ||| | |  |  ||  ||| |||||
CAGAGGAAGATGTTGAGCAGCTGTTGGTGTCGCTGATTTTGGATAACCGAATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAGgttgagtttcat------ttttttttttattgatt--atctgttgttgttgtatcgttaatattatttaccttggtttatctattgtccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192307528|gb|FK002046.1|FK002046
EST:     ATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGATTTGATAG                         GTCGAAAGGAATGAAAAAGTACACTGCCGTAGACAAATGGAACACACAGCT
genomic: ATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGATCTGATAGgtgagttttt ... acatttccagGTCGAAAGGAATGAAAAAGTACACTGCCGTAGACAAATGGAACACACAGCT
EST: gi|11411597|gb|BF423608.1|BF423608
EST:     ATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGATCTGATAG                         GTCGAAAGGAATGAAAAAGTACACTGCCGTAGACAAATGGAACACACAGCT
genomic: ATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGATCTGATAGgtgagttttt ... acatttccagGTCGAAAGGAATGAAAAAGTACACTGCCGTAGACAAATGGAACACACAGCT
EST: gi|58018332|gb|CX705074.1|CX705074
EST:     ATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGATCTGATAG                         GTCGAAAGGAATGAAAAAGTACACTGCCGTAGACAAATGGAACACACAGCT
genomic: ATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGATCTGATAGgtgagttttt ... acatttccagGTCGAAAGGAATGAAAAAGTACACTGCCGTAGACAAATGGAACACACAGCT
EST: gi|11273882|gb|BF324271.1|BF324271
EST:     ATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGATCTGATAG                         GTCGAAAGGAATGAAAAAGTACACTGCCGTAGACAAATGGAACACACAGCT
genomic: ATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGATCTGATAGgtgagttttt ... acatttccagGTCGAAAGGAATGAAAAAGTACACTGCCGTAGACAAATGGAACACACAGCT
EST: gi|207844944|gb|GD817481.1|GD817481
EST:     ATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGATCTGATAG                         GTCGAAAGGAATGAAAAAGTACACTGCCGTAGACAAATGGAACACACAGCT
genomic: ATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGATCTGATAGgtgagttttt ... acatttccagGTCGAAAGGAATGAAAAAGTACACTGCCGTAGACAAATGGAACACACAGCT
EST: gi|193482516|gb|FK444857.1|FK444857
EST:     ATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGATCTGATAG                         GTCGAAAGGAATGAAAAAGTACACTGCCGTAGACAAATGGAACACACAGCT
genomic: ATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGATCTGATAGgtgagttttt ... acatttccagGTCGAAAGGAATGAAAAAGTACACTGCCGTAGACAAATGGAACACACAGCT
EST: gi|58014800|gb|CX701542.1|CX701542
EST:     ATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGATCTGATAG                         GTCGAAAGGAATGAAAAAGTACACTGCCGTAGACAAATGGAACACACAGCT
genomic: ATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGATCTGATAGgtgagttttt ... acatttccagGTCGAAAGGAATGAAAAAGTACACTGCCGTAGACAAATGGAACACACAGCT