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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTAACACTCGAAGATGTTGTTGAGGAAATTGTTGGTGAAATATTTGATGAAAATGACTCAAAGgtaaatgcttgtgcttaatctttactttgtttcttttaaatttatttttaaataactgaaagtgaagcatatattgaattcatccatctttactctgttt...

Basic information

species Glycine max
transcript GLYMA02G46780.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46780.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os03g39640.2 (Oryza sativa), 5'ss of exon 11
ATTGTAACACTCGAAGATGTTGTTGAGGAAATTGTTGGTGAAATATTTGATGAAAATGACTCAAAGgtaaatgcttgtgcttaatctttactttgtttcttttaaatttatttttaaataactgaaagtgaagcatatattgaattcatccatctttactctgttt
||||||||| | ||||||||||| || ||||| ||||| ||||| || ||||| ||||| ||||||||      ||    |    ||||   ||     |||  |||| |   |  |||  |    |    |   | ||| ||| | ||   |  || ||   |||
ATTGTAACATTAGAAGATGTTGTGGAAGAAATAGTTGGAGAAATCTTCGATGAGAATGATTCAAAGgttggctatttcagtggtccttttgatttaaattttacaattcagagtctaatgccatttaccacacgctgtatggaagtgatatttgatttctgctttt

upper sequence: GLYMA02G46780.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G13070.1 (Arabidopsis thaliana), 5'ss of exon 11
ATTGTAACACTCGAAGATGTTGTTGAGGAAATTGTTGGTGAAATATTTGATGAAAATGACTCAAAGgtaaatgcttgtgcttaatcttt-----actttgtttcttttaaattta--tttttaaataac-tgaaagtgaagcatatattga--attcatccatcttta---ctctgttt-----------------------------------
|| ||||| || |||||||| || || || |||||||||||||| ||||||||||| || || || |||| |||    | || | || |     |   |  |  || || |  ||  ||| || | ||  | ||  |  | | || ||     |||   ||||   ||   |||| ||                                    
ATAGTAACTCTTGAAGATGTGGTCGAAGAGATTGTTGGTGAAATTTTTGATGAAAACGATTCCAAAgtaagtgccctagtttcaactctttaagaaaatcgtcattctagacctacatttctagagaatattaacctatatcttacataacttatttgcccattagtaaggctctattccattgcttatggcctccatgattttggctcaatag

upper sequence: GLYMA02G46780.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G55930.1 (Arabidopsis thaliana), 5'ss of exon 11
ATTGTAACACTCGAAGATGTTGTTGAGGAAATTGTTGGTGAAATATTTGATGAAAATGACTCAAAGgtaaatgcttgtgcttaatctttactt--tgtttcttttaaatttatttttaaataactgaaagtgaagcatatattgaatt-catccatctttactctgttt------------------------------------
|| ||||| || |||||||| || || || |||||||||||||||||||||||||| || ||||||||||  |||  | | || | |   |||  ||    | || ||  |    || ||||   | |  |  || | | |  |  ||  |||       |       |                                    
ATAGTAACTCTTGAAGATGTGGTCGAAGAGATTGTTGGTGAAATATTTGATGAAAACGATTCAAAGgtaa--gctcat-cctagtttcagcttgttgccattcttcaaggttgggttgaatagtaggagattcagaacaaaacgggttatatctgagagcagaggagattcaaatttctcacttccattgttttgggctcaatag

upper sequence: GLYMA02G46780.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 11
ATTGTAACACTCGAAGATGTTGTTGAGGAAATTGTTGGTGAAATATTTGATGAAAATGACTCAAAGgtaaatgcttgtgcttaatctttactttgtttcttttaaatttatttttaaataactgaaagtgaagcatatattgaattcatccatctttactctgttt------
|| ||||| || |||||||| |||||||||||||| |||||||| || ||||| ||||| ||||| ||||| |||     |  ||||||      ||| ||||     ||||||   | |     || |      | |  |||||   ||||  |||| |  ||        
ATAGTAACCCTGGAAGATGTGGTTGAGGAAATTGTCGGTGAAATCTTCGATGAGAATGATTCAAAAgtaaa-gctccctttatatcttttggaactttgtttttgg--tattttatgacattcataattcc--tctctcatgaatggttccacgtttagtg-gtggaagtgg

upper sequence: GLYMA02G46780.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S7_173V6.1 (Physcomitrella patens), 5'ss of exon 14
ATTGTAACACTCGAAGATGTTGTTGAGGAAATTGTTGGTGAAATATTTGATGAAAATGACTCAAAGgtaaatgcttgtgcttaatctttactttgt------------ttcttttaaatttattttt--aaataactgaaagtgaagcatatattgaattcatccatctttactctgttt------------------------------------------------------------------
 ||||||| || ||||||||||| || || |||||||| || || || ||||||||||| ||||||||   |  ||||    ||  | |  ||||             |  || | |||  ||  ||  ||  | || |        ||  |   ||  |||| ||  |||||| || |                                                                   
GTTGTAACGCTGGAAGATGTTGTGGAAGAGATTGTTGGGGAGATTTTCGATGAAAATGATTCAAAGgttggtcattgtttacaaggtcttgtttgggaatgaacaacatctttctgaatcgatccttgcaaccagctcatgagctgccacgttaagagatcatgcacatttactatgctgaggtgcatacttgtacacctatatcatcaggctttaattggggggctcttggacttgtgaatgcag

upper sequence: GLYMA02G46780.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S147_55V6.1 (Physcomitrella patens), 5'ss of exon 13
ATTGTAACACTCGAAGATGTTGTTGAGGAAATTGTTGGTGAAATATTTGATGAAAATGACTCAAAGgtaaatgcttgtgcttaatctttactttgtttcttttaaatttattttta----aataactgaaagtgaagcatata--ttgaattcatccatctttactctgttt--------------------------------------------------------------------------
 |||| ||||| ||||||||||| || || |||||||| ||||| |||||||||||||| || |||||   |  ||   || |||   || ||||     |  ||||   |||||     ||     |  | ||   |||     || | ||||     |||| |   ||                                                                            
GTTGTGACACTGGAAGATGTTGTGGAAGAGATTGTTGGCGAAATTTTTGATGAAAATGATTCCAAGgttggttatttccctgaattcctattttgaaaactagaaatgcctttttgtctcaaccctcgctactggttcatgagctttcagttcaagggactttgcagggtagttatgctaaaacttatatttgtgtatgtacatcaccatccttaaacttctctgctcatggaaatttgtttccag

upper sequence: GLYMA02G46780.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S58_81V6.1 (Physcomitrella patens), 5'ss of exon 14
ATTGTAACACTCGAAGATGTTGTTGAGGAAATTGTTGGTGAAATATTTGATGAAAATGACTCAAAGgtaaatgcttgtgcttaatc----tttactttgtttcttttaaatttatttttaaataactgaaa-----gtgaagcatatattgaattcatccatctttactctgttt-------------------------------------------------------------------------------
 |||| ||| | ||||| |||||||| ||||||||||||||||| |||||||||||||| || |||||   || ||  | ||| ||    |||| | | |    |   ||||| ||||  | |   |   |      |  ||||| |  |||  |      |    |      |                                                                                
GTTGTGACATTGGAAGACGTTGTTGAAGAAATTGTTGGTGAAATTTTTGATGAAAATGATTCGAAGgttggtgatttcgtttattcaatgtttattctttgctgtgggaatttcttttctatttgtttggattctcatagagcatttcatgagctgtcaggttaagagagcactggagagttttcatacagaaacttgtatatttttttatattgcgttacatcaccaggcggtgcttggcattttgaatgcag

upper sequence: GLYMA02G46780.1 (Glycine max), 5'ss of exon 11
lower sequence: EFJ38618 (Selaginella moellendorffii), 5'ss of exon 11
ATTGTAACACTCGAAGATGTTGTTGAGGAAATTGTTGGTGAAATATTTGATGAAAATGACTCAAAGgtaaatgcttgtgcttaatctttactttgttt----cttttaaatttatttttaaataactgaaagtgaagcatatattgaattcatccatctttactctgttt
||||||||||| ||||||||||||||||| |||||||| ||||| ||||| ||||| || || |||||      |||| |||  |  | |  || | |    ||| |||||   | |||  || || || ||                                      
ATTGTAACACTGGAAGATGTTGTTGAGGAGATTGTTGGAGAAATTTTTGACGAAAACGATTCCAAGgttttgctttgttcttgttgctgatgttttctgaagcttataaatg-gtctttttatgac-gatag--------------------------------------

upper sequence: GLYMA02G46780.1 (Glycine max), 5'ss of exon 11
lower sequence: EFJ31527 (Selaginella moellendorffii), 5'ss of exon 11
ATTGTAACACTCGAAGATGTTGTTGAGGAAATTGTTGGTGAAATATTTGATGAAAATGACTCAAAGgtaaatgcttgtgcttaatctttactttgttt----cttttaaatttatttttaaataactgaaagtgaagcatatattgaattcatccatctttactctgttt
||||||||||| ||||||||||||||||| |||||||| ||||| ||||| ||||| || || |||||      |||| |||| |  | |  || | |    ||| |||||   | |||  || || || ||                                      
ATTGTAACACTGGAAGATGTTGTTGAGGAGATTGTTGGAGAAATTTTTGACGAAAACGATTCCAAGgttttgctttgttcttattgctgatgttttctgaagcttataaatg-gtctttttatgac-gatag--------------------------------------