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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAGgtatagtatctctatttgattacacttgcccttgcaatgtaataatacatgcgcttttgttccttgcacag

Basic information

species Glycine max
transcript GLYMA02G45000.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G141258_T01 (Zea mays), 5'ss of exon 11
TTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAGgtatagtatctctatttgattacacttgcccttgc-------aatgtaataatacatgcgcttttgttccttgcacag---------
 |||||||| ||||| ||||| ||  | |||||||||||||| || ||||||||| | || || ||||| |||||||| || || || ||| | ||| |||  |||  |   |||| | |          |||  |||  |   |   | ||  |  ||  ||||          
GTGGAGAAACGATACTAATGTTATACTTGCTGATGAAATGGGTCTGGGAAAAACTATCCAATCTGTATCCATGCTTGGCTTCCTTCATgta-attatttctcattgtatttgcttgtcatcattacgatgaataaaattgtcttttaacattaatatctgacacatctgttgtag

upper sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 11
lower sequence: AT2G13370.1 (Arabidopsis thaliana), 5'ss of exon 12
TTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAGgtatag---tatctctatttgattacacttgcc------cttgcaatgtaataatacatgcgcttttgttccttgcacag-----------------------------------------------------
 |||   |||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||| || |||||||| ||| | |||||  |    | | ||| ||  | |   | | |       ||    || |   ||| | ||  || || ||| | |||                                                        
CTGGCTTAATGATACTAATGTCATTTTGGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTTTCAATGCTTGGGTTTTTGCAGgtgaaaatctttttcttttcaagtgagcgttcaagtttgctcatgatttggaaat-cttgttctctt-ttcttagcattacttttcatgagctaacatatctcttcttttatttcttttcttttttcttgcag

upper sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 11
TTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAGgta------tagtatct-ctatttg----attacacttgcccttgcaat-gtaataatacatgcgcttttgttccttgcacag----------------------------------------------------------------------------
 |||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||| |||||||| || |||||||| ||| | ||||||      |||||  |  |||| |    ||||   ||||  |||   |  | || ||  ||  | | |||||  |  ||                                                                               
CTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAGgtaagcatctagtagttattattagtagtattattattgcttttgtgtttattatcatttat-tgttattgttgttgtcattattattattattattacttttttcttgtagttccttgtagacttataatccaaggaaacattcatttgttcttacag

upper sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S93_123V6.1 (Physcomitrella patens), 5'ss of exon 12
TTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAGgtatag----------------tatctctatttgattacacttgcccttgcaatgtaataatacatgcgcttttgttccttgcacag-------------
|||||| || || || ||||| ||  | || ||||||||||| ||||| || || ||||||||||| ||||||||||| ||| | ||||| | |                ||  |   |||  |     |||  | ||  ||||  ||| | |      ||| ||  |   |                
TTGGAGGAACGACACCAATGTTATCCTTGCAGATGAAATGGGTCTTGGCAAGACAGTTCAGTCAGTCTCGATGCTTGGATTTTTGCAGgtgtggacctgacttagtgctctactttctttttttcctttttgttcatgtgatgttttaaaaaaactaagtttattattattattattattattatttt

upper sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S317_10V6.1 (Physcomitrella patens), 5'ss of exon 12
TTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAGgtatagtatctctatttgattacacttgcccttgcaatgtaataatacatgcgcttttgttccttgcacag--------------------------------
||||||||| || || ||||| ||| | || ||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||| | |   |  ||  | | | | ||  | ||  |  | |     |   |     | | |  |   ||||                                 
TTGGAGAAACGACACCAATGTTATTCTTGCGGATGAAATGGGTCTTGGCAAGACGGTTCAGTCAGTGTCGATGCTTGGATTTCTTCAGgtgtgg--accttacct-actgctctctctctctctctctctctctctctctctctctctcacacacacacacacacacacacaaatgtatatatagcacact