Sequence
atgc intronic sequence ATGC exonic sequenceTCCCAATCTTGATGAGCATCGCTCAACAGTGTTTCAAGTTCTTCAACAAATAGGGGTGTCAGAAGAGAAGCTTCAGAATATGATTGAAGTTTGGAATAAGgtaatacaagtatataacttatcttctcttcaaccaaaatgcaagaaaaactgtcgactatatctctctctgctcaatctctggaaatgcttag
Basic information
species | Glycine max |
transcript | GLYMA02G44930.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G44930.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G49725.1 (Arabidopsis thaliana), 5'ss of exon 12
TCCCAATCTTGATGAGCATCGCTCAACAGTGTTTCAAGTTCTTCAACAAATAGGGGTGTCAGAAGAGAAGCTTCAGAATATGATTGAAGTTTGGAATAAGgtaatacaagtatataacttatcttctcttcaaccaaaatgcaagaaaaactgtcgactatatctctctctgctcaatctctggaaatgcttag
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TCCAAATATCGAGGAGCATCGTTCAACAGTGCTTCATGTCCTAAATCAAATTGGAGTACCTGAAGAGAAGCTTCAAAATATGATTGAAGTCTGGAATAAGgtaggattgatatataa---accatctatacaagta--------gaagaagcaaccaccttttttcacactgggaattttgttgtag-------
upper sequence: GLYMA02G44930.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv00s0734g00020.t01 (Vitis vinifera), 5'ss of exon 12
TCCCAATCTTGATGAGCATCGCTCAACAGTGTTTCAAGTTCTTCAACAAATAGGGGTGTCAGAAGAGAAGCTTCAGAATATGATTGAAGTTTGGAATAAGgtaatacaagtatataacttatcttctcttcaaccaaaatgcaagaaaaactgtcgactatatctctctctgctcaatctctggaaatgcttag
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ATCAGATCTTGATGAGCAACGGTCAGTTGTATTGCAAGTTCTCCAGCAGATAGGAGTATCTGAGGAGAAGCTTCAGAACATGCTTGAAGTCTGGAATAAGgtactgcttacttcaaccctaccctct----accctaaat-----aataattttc--ccacatca-tattttttgaattctgagaaattctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192327889|gb|FK022448.1|FK022448EST: TAGGGGTGTCAGAAGAGAAGCTTCAGAATATGATTGAAGTTTGGAATAAG ATTGATATGGAAGAAGAATGCATGAATGTTGATGAATATCTTGATGATGAA
genomic: TAGGGGTGTCAGAAGAGAAGCTTCAGAATATGATTGAAGTTTGGAATAAGgtaatacaag ... aaatgcttagATTGATATGGAAGAAGAATGCATGGATGTTGATGAATATCTTGATGATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCCAATCTTGATGAGCATCGCTCAACAGTGTTTCAAGTTCTTCAACAAATAGGGGTGTCAGAAGAGAAGCTTCAGAATATGATTGAAGTTTGGAATAAGgtaatacaagtatataacttatcttctcttcaaccaaaatgcaagaaaaactgtcgactatatctctctctgctcaatctctggaaatgcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG