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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCTGGCCAAATATCTGTCACTGACTATGTCCGGATAACAAGCACTGAATGgtatattttcagttaatcaaagtgaaaattatctttcagttcttatgactataaaggaaaactgtttggtaaagatgccaaaaaccaaaagtataactgtataactgatgctttttgtttctacaatcatttcag

Basic information

species Glycine max
transcript GLYMA02G44690.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44690.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 11
GAATCTGGCCAAATATCTGTCACTGACTATGTCCGGATAACAAGCACTGAATGgtatattttcagt-taatcaaa-gtgaaaattatctttcagttcttatgactataaaggaaaac-tgtttggtaaagatgccaaaaaccaaaagtataactgtataactga-tgctttttgtttctaca--atcatttcag
|| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||  |||||   | ||||    || | |   ||  | |   || |  | | || | || |   |||||   ||      |  |    |    |  |||  |||     | ||  |||   || ||||  ||  ||||||
GAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATGgtatgctttcaaagtgatcatttatgtagaggttccctaaa--ctgaaaaatgtataagatagtgtgttttacaatttaatctcagtttacctatcaaaccatatggaaaagtgagtttaacttttacattattttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120496721|gb|EH224888.1|EH224888
EST:     GTCACTGACTATGTCCGGATAACAAGCACTGAATG                         TGCTAAAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTCCCAGGATC
genomic: GTCACTGACTATGTCCGGATAACAAGCACTGAATGgtatattttc ... atcatttcagTGCTAAAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTCCCAGGATC
EST: gi|23730285|gb|BU763240.1|BU763240
EST:     TCTGGCCAAATATCTGTCACTGACTATGTCCGGATAACAAGCACTGAATG                         TGCTAAAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTCCCAGGATC
genomic: TCTGGCCAAATATCTGTCACTGACTATGTCCGGATAACAAGCACTGAATGgtatattttc ... atcatttcagTGCTAAAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTCCCAGGATC
EST: gi|22929708|gb|BU546847.1|BU546847
EST:     TCTGGCCAAATATCTGTCACTGACTATGTCCGGATAACAAGCACTGAATG                         TGCTAAAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTCCCAGGATC
genomic: TCTGGCCAAATATCTGTCACTGACTATGTCCGGATAACAAGCACTGAATGgtatattttc ... atcatttcagTGCTAAAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTCCCAGGATC
EST: gi|21994166|gb|BQ785694.1|BQ785694
EST:     TCTGGCCAAATATCTGTCACTGACTATGTCCGGATAACAAGCACTGAATG                         TGCTAAAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTCCCAGGATC
genomic: TCTGGCCAAATATCTGTCACTGACTATGTCCGGATAACAAGCACTGAATGgtatattttc ... atcatttcagTGCTAAAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTCCCAGGATC