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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTGTCATGTCTATGTTGATAAGTCTGCTAATGTGGAGATGGCAAGGCGGATTGTACTTGATGCAAAAATAGATTATCCAGCAGCCTGCAACGCCATGgtaaactaaatgtactcaatgaccctacaagattggtaaagccagcaatgtctgatgtacataacttctctgttttcaaattccaacattcag

Basic information

species Glycine max
transcript GLYMA02G41850.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G41850.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os05g38150.1 (Oryza sativa), 5'ss of exon 13
AGTTTGTCATGTCTATGTTGATAAGTCTGCTAATGTGGAGATGGCAAGGCGGATTGTACTTGATGCAAAAATAGATTATCCAGCAGCCTGCAACGCCATGgtaaactaaatgtactcaatgaccct--acaagattggtaaagccagcaatgtctgatgtacataacttctctgttttcaaattcc-aacattcag-------
  | || || || ||| |||| || || ||| |  |||| |||||||  |  |||||| | ||||||||||| ||||| |||||||||||||| || ||||||   |  ||  | |     ||| |  | |  |||   | ||   ||  |  | | |  |  ||  || |    | ||     |  || |||  |       
TATATGCCACGTATATATTGACAAATCAGCTGACATGGATATGGCAAAACATATTGTAATGGATGCAAAAATTGATTACCCAGCAGCCTGCAATGCAATGgta---tctatccagtttgctaccgtgtatagtattcaaatagattgcttttacagtttcagttactttttggagtatctttcactgaatattttggacaatt

upper sequence: GLYMA02G41850.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G55610.2 (Arabidopsis thaliana), 5'ss of exon 14
AGTTTGTCATGTCTATGTTGATAAGTCTGCTAATGTGGAGATGGCAAGGCGGATTGTACTTGATGCAAAAATAGATTATCCAGCAGCCTGCAACGCCATGgtaaactaaatgta-ctcaatgacc-ctacaagattg-gtaaagccagca-atgtctgatgtacataacttctctgttttcaaattccaacattcag-------------------
| | |||||||| |||||||||||||||| |||  |||| ||||||| ||| |||||    ||||||||  | || |||||||||||||| || || ||||| |   |    |  |||  | ||  ||      ||  |  |||  |     | | || |   ||     |   | || ||  | | || | |                       
AATCTGTCATGTATATGTTGATAAGTCTGGTAAACTGGACATGGCAAAGCGCATTGTTTCCGATGCAAAGTTGGACTATCCAGCAGCCTGTAATGCGATGgttagagattcttgtctctttcactactgttcacttatgcgaagtgatttcgtttttggttctcacttagtactttttgtctcacttcaccttctctttttatttggtcctaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6070488|gb|AW099875.1|AW099875
EST:     GGATTGTACTTGATGCAAAAATAGATTATCCAGCAGCCTGCAACGCCATG                         GAAACACTTCTTGTCCACAAGGATTTGATAGAGAAAGGTTGGTTAAATGAT
genomic: GGATTGTACTTGATGCAAAAATAGATTATCCAGCAGCCTGCAACGCCATGgtaaactaaa ... caacattcagGAAACACTTCTTGTCCACAAGGATTTGATAGAGAAAGGTTGGTTAAATGAT
EST: gi|254315128|gb|GR830121.1|GR830121
EST:     GGA-TGTACTTGATGCAAAAATAGATTATCCAGCAGCCTGCAACGCCATG                         GAAACACTTCTTGTCCACAAGGATTTGATAGAGAAAGGTTGGTTAAATGAT
genomic: GGATTGTACTTGATGCAAAAATAGATTATCCAGCAGCCTGCAACGCCATGgtaaactaaa ... caacattcagGAAACACTTCTTGTCCACAAGGATTTGATAGAGAAAGGTTGGTTAAATGAT