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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATTATTTTCTCAGACCAAGTATAAGGAGGCTGCGGAGCTCGCTGCAGAATCTCCACGAGGAATTCTTCGAACTCCTGACACTGTTGCTAAATTTCAGgtacacttttgtgtttagattttctctgttgtacatgccggtgcttcttgttcctgttaagtgttttctctcagttgtatggtgtttattaattgtggcgatttatatgggagttcaatatgcttttttttcatctatttctttattttcttttcag

Basic information

species Glycine max
transcript GLYMA02G39360.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 11
AGAATTATTTTCTCAGACCAAGTATAAGGAGGCTGCGGAGCTCGCTGCAGAATCTCCACGAGGAATTCTTCGAACTCCTGACACTGTTGCTAAATTTCAGgtacacttttgtgtttagattttctctgttgtacatgccggtgcttcttgttcctgttaagtgttttctctcagttgtatggtgtttattaattgtggcgatttatatgggagttcaatatgcttttttttcatctatttctttattttcttttcag
|||||| ||| | || || || || ||||| || || ||| | |||||||||||||| | |||  |||| ||||||||||| |||||||| ||||||||||| || || ||   ||    || |   | | |  |  |   | |||    | | | |||    | || |     || | |  |||| |    ||      | |||| ||                                                
AGAATTGTTTGCACAAACAAAATACAAGGAAGCAGCTGAGTTGGCTGCAGAATCTCCTCAAGGTCTTCTCCGAACTCCTGAGACTGTTGCAAAATTTCAGgtgcatttctgctcttga--ttacagagctattaacac---ttctttacctccattttacagctatttttcacattctgtactgttaaaagctta----aaattatgtg------------------------------------------------

upper sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 11
AGAATTATTTTCTCAGACCAAGTATAAGGAGGCTGCGGAGCTCGCTGCAGAATCTCCACGAGGAATTCTTCGAACTCCTGACACTGTTGCTAAATTTCAGgtacacttttgtgtttagattttctctgttgtacatgccggtgcttcttgttcctgttaagtgttttctctcagttgtatggtgtttattaattgtggcgatttatatgggagttcaatatgcttttttttcatctatttctttattttcttttcag
|||||| ||| | || || || || ||||| || || ||| | |||||||||||||| | |||  |||| ||||||||||| |||||||| ||||||||||| || || ||   ||    || |   | | |  |  |   | ||||   | | | |||    | || |     || | |  |||| |    ||      | |||| ||                                                
AGAATTGTTTGCACAAACAAAATACAAGGAAGCAGCTGAGTTGGCTGCAGAATCTCCTCAAGGTCTTCTCCGAACTCCTGATACTGTTGCAAAATTTCAGgtgcatttctgctcttga--ttacagagctattaacac---ttcttcacctccattttacagctatttttcacattctgtactgttaaaagctta----aaattatgtg------------------------------------------------

upper sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 11
AGAATTATTTTCTCAGACCAAGTATAAGGAGGCTGCGGAGCTCGCTGCAGAATCTCCACGAGGAATTCTTCGAACTCCTGACACTGTTGCTAAATTTCAGgtacacttttgtgtttagattttctctgttgtacatgccggtgcttcttgttcctgttaagtgttttctctcagttgtatggtgtttattaattgtggcgatttatatgggagttcaatatgcttttttttcatctatttctttattttcttttcag
|||| | ||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||  ||| | || || |||||||| |||||||| |||||||||||| |   || || || | || | | |||   |  | |       |||      | | |  || || ||        ||||  ||| |     |||    |||||  |    |                                            
AGAACTGTTTGCTCAGACAAAGTATAAGGAAGCTGCGGAGCTTGCTGCAGAATCTCCACAGGGACTCCTGCGTACTCCTGATACTGTTGCCAAATTTCAGgtatatcatt-tggttggcttgtttatgt---attttctta-atatctgacaattctcagatgcttcct--------tatgaagttgaacttatgttctcatttaatttcagg--------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207783597|gb|GD755961.1|GD755961
EST:     AATCTCCACGAGGAATTCTTCGAACTCCTGACACTGTTGCTAAATTTCAG                         AGTGTACCTGTGCAAGCTGGGCAGACGCCACCACTGTTGCAGTACTTTGGT
genomic: AATCTCCACGAGGAATTCTTCGAACTCCTGACACTGTTGCTAAATTTCAGgtacactttt ... ttcttttcagAGTGTACCTGTGCAAGCTGGGCAGACGCCACCACTGTTGCAGTACTTTGGT
EST: gi|207750074|gb|GD726028.1|GD726028
EST:     AATCTCCACGAGGAATTCTTCGAACTCCTGACACTGTTGCTAAATTTCAG                         AGTGTACCTGTGCAAGCTGGGCAGACGCCACCACTGTTGCAGTACTTTGGT
genomic: AATCTCCACGAGGAATTCTTCGAACTCCTGACACTGTTGCTAAATTTCAGgtacactttt ... ttcttttcagAGTGTACCTGTGCAAGCTGGGCAGACGCCACCACTGTTGCAGTACTTTGGT