Sequence
atgc intronic sequence ATGC exonic sequenceGCTGTAGACTATCCGCAGAGAAGATATAGAATCATTCTTAGAAGCACAATGGGCCCCATTGATGTCTACCTTATCAGgtataagtgtcttggctagtattatttacttaaaacttttttgttttctctcttatgctttccatccagaaatcacattagtctgtatttcctatctgat...
Basic information
species | Glycine max |
transcript | GLYMA02G35850.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G35850.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os02g33430.2 (Oryza sativa), 5'ss of exon 10
GCTGTAGACTATCCGCAGAGAAGATATAGAATCATTCTTAGAAGCACAATGGGCCCCATTGATGTCTACCTTATCAGgtataagtgtcttggctagtattatttacttaaaacttttttgttttctctcttatgctttccatccagaaatcacattagtctgtatttcctatctgat
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GCTGGTGATTATCTCCAGAGAAGATATAGAATCGTATTAAGAAGTACAATGGGCCCAATAGATGTCTACTTAGTTAGgtaatggtgcattcctc-----tgttgatgttaaatacatgaattgattttcacctgatcaaaaccttaccattttatttag------------------
upper sequence: GLYMA02G35850.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv08s0007g02510.t01 (Vitis vinifera), 5'ss of exon 11
GCTGTAGACTATCCGCAGAGAAGATATAGAATCATTCTTAGAAGCACAATGGGCCCCATTGATGTCTACCTTATCAGgtataagtgtcttggctagtattatttacttaaaacttttttgttttctctcttatgctttccatccagaaatc-acattagtct--gtatttcctatctgat---------------------------------------------------------------------------------------
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GCTGTTGACTATCCACAGAGAAGATATCGTATAGTCCTTAGAAGCACAATGGGTCCAATCGATGTCTACCTTGTCAGgtattcttgccttttctaatggggcagaagtatttactttggcacatttttaatccatatcccatctgcaactccgcattcctctttgtgttggttggatgatggacaacttgggatcctttctagtcctgatattcttctctttcttctcttctttcttttccctctttccctggcatttgttctttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13790369|gb|BG652960.1|BG652960EST: AGAATCATTCTTAGAAGCACAATGGGCCCCATTGATGGCTACCTTATCAG TCAATTTGAAGAGAAATTTGAAGAGGTTAATGGTGCTGAGC-CCCCATGAT
genomic: AGAATCATTCTTAGAAGCACAATGGGCCCCATTGATGTCTACCTTATCAGgtataagtgt ... ctgttttcagTCAATTTGAAGAGAAATTTGAAGAGGTTAATGGTGCTGAGCTCCCCATGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGTAGACTATCCGCAGAGAAGATATAGAATCATTCTTAGAAGCACAATGGGCCCCATTGATGTCTACCTTATCAGgtataagtgtcttggctagtattatttacttaaaacttttttgttttctctcttatgctttccatccagaaatcacattagtctgtatttcctatctgat
- - - - - - - - - - - - - - - - - - - AGAAGC