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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGACACACCGGCGATACCTGGCTCGTGATGAGGGAACTTATGGTCCAATGCCACGCAGAATCCCAAAGGGGTTATTGGGAATGCCATTCAATACCACAgtaagtctaccataaacaaacggttcagttatagaaacattctgctatgcttttagaatgcaatgattaaagtaagccataaacaaataaaactttcag

Basic information

species Glycine max
transcript GLYMA02G34060.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G34060.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv08s0032g00800.t01 (Vitis vinifera), 5'ss of exon 11
TAAGACACACCGGCGATACCTGGCTCGTGATGAGGGAACTTATGGTCCAATGCCACGCAGAATCCCAAAGGGGTTATTGGGAATGCCATTCAATACCACAgtaagtct-accataaacaa---acggttcagt-tatagaaacattctgctatgcttttagaatgcaatgattaaagtaagccataaacaaataaaactttcag
 || |||||| |||| || || ||||| ||| | || || ||||| |||||||| |||||||  || ||||| ||||||||||||||||||||||| || |||||| | ||||||| ||    | |||| ||| | |||  |  || |  |  | ||||||     | ||| | || |    |||  |   ||  ||||| |||
AAAAACACACAGGCGTTATCTTGCTCGAGATAATGGCACGTATGGACCAATGCCTCGCAGAACACCTAAGGGATTATTGGGAATGCCATTCAATACAACTgtaagttttaccataatcagtagatggttaagtatttagcgattttttatttggtttttag--cttagtgaatgaactggatcatgtaatgatggaacttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120531022|gb|EH259155.1|EH259155
EST:     TGCCACGCAGAATCCCAAAGGGGTTATTGGGAATGCCATTCAATACCACA                         GGCATAGATGGTCTTTACTGTGTTGGCGATAGCTGCTTCCCTGGACAAGGT
genomic: TGCCACGCAGAATCCCAAAGGGGTTATTGGGAATGCCATTCAATACCACAgtaagtctac ... aaactttcagGGCATAGATGGTCTTTACTGTGTTGGCGATAGCTGCTTCCCTGGACAAGGT
EST: gi|51341204|gb|CO982521.1|CO982521
EST:     TGCCACGCAGAATCCCAAAGGGGTTATTGGGAATGCCATTCAATACCACA                         GGCATAGATGGTCTTTACTGTGTTGGCGATAGCTGCTTCCCTGGACAAGGT
genomic: TGCCACGCAGAATCCCAAAGGGGTTATTGGGAATGCCATTCAATACCACAgtaagtctac ... aaactttcagGGCATAGATGGTCTTTACTGTGTTGGCGATAGCTGCTTCCCTGGACAAGGT
EST: gi|31306683|gb|CD391886.1|CD391886
EST:     TGCCACGCAGTATCCCAAAGGGGTTATTGGGAATGCCATTCAATACCACA                         GGCATAGATGGTCTTTACTGTGTTGGCGATAGCTGCTTCCNTGGACAAGGT
genomic: TGCCACGCAGAATCCCAAAGGGGTTATTGGGAATGCCATTCAATACCACAgtaagtctac ... aaactttcagGGCATAGATGGTCTTTACTGTGTTGGCGATAGCTGCTTCCCTGGACAAGGT
EST: gi|31307567|gb|CD392770.1|CD392770
EST:     GGGTTATTGGGAATGCCATTCAATACCACA                         GGCATAGATGGTCTTTACTGTGTTGGCGATAGCTGCTTCCCTGGACAAGGT
genomic: GGGTTATTGGGAATGCCATTCAATACCACAgtaagtctac ... aaactttcagGGCATAGATGGTCTTTACTGTGTTGGCGATAGCTGCTTCCCTGGACAAGGT
EST: gi|120531714|gb|EH259847.1|EH259847
EST:     TGCCACGCAGAATCCCAAAGGGGTTATTGGGAATGCCATTCAATACCACA                         GGCATAGATGGTCTTTACTGTGTTGGCGATAGCTGCTTCCCTGGACAAGGT
genomic: TGCCACGCAGAATCCCAAAGGGGTTATTGGGAATGCCATTCAATACCACAgtaagtctac ... aaactttcagGGCATAGATGGTCTTTACTGTGTTGGCGATAGCTGCTTCCCTGGACAAGGT
EST: gi|31456099|gb|CD398127.1|CD398127
EST:     CGCAGAATCCCAAAGGGGTTATTGGGAATGCCATTCAATACCACA                         GGCATAGATGGTCTTTACTGTGTTGGCGATAGCTGCTTCACTGGACAAGGT
genomic: CGCAGAATCCCAAAGGGGTTATTGGGAATGCCATTCAATACCACAgtaagtctac ... aaactttcagGGCATAGATGGTCTTTACTGTGTTGGCGATAGCTGCTTCCCTGGACAAGGT
EST: gi|193691800|gb|FK628965.1|FK628965
EST:     TGCCACGCAGAATCCCAAAGGGGTTATTGGGAATGCCATTCAATACCACA                         GGCATAGATGGTCTTTACTGTGTTGGCGATAGCTGCTTCCCTGGACAAGGT
genomic: TGCCACGCAGAATCCCAAAGGGGTTATTGGGAATGCCATTCAATACCACAgtaagtctac ... aaactttcagGGCATAGATGGTCTTTACTGTGTTGGCGATAGCTGCTTCCCTGGACAAGGT
EST: gi|120531909|gb|EH260042.1|EH260042
EST:     TGCCACGCAGAATCCCAAAGGGGTTATTGGGAATGCCATTCAATACCACA                         GGCATAGATGGTCTTTACTGTGTTGGCGATAGCTGCTTCCCTGGACAAGGT
genomic: TGCCACGCAGAATCCCAAAGGGGTTATTGGGAATGCCATTCAATACCACAgtaagtctac ... aaactttcagGGCATAGATGGTCTTTACTGTGTTGGCGATAGCTGCTTCCCTGGACAAGGT