Sequence
atgc intronic sequence ATGC exonic sequenceAGGACACAGCACTTCCTTCACCTGAATGGTCCTCAGATCACATAGCTCTCTTAGCCGAATTTCGCTGCTGCAAGAATAAATCTAGGCGTTGACAGTTAAGgtaggcaccatcctcaacccccccacccacatatagcttgtttgagaattattattggaaaagatcaacggaagtgaactttcttttggtgctggttcct...
Basic information
species | Glycine max |
transcript | GLYMA02G26620.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G26620.2 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os03g07080.1 (Oryza sativa), 5'ss of exon 12
---AGGACACAGCACTTCCTTCACCTGAATGGTCCTCAGATCACATAGCTCTCTTAGCCGAATTTCGCTGCTGCAAGAATAAATCTAGGCGTTGACAGTTAAGgta--ggcaccatcctcaacccccccacccac-atatagcttgtttgagaattattattggaaaagatcaacggaagtgaactttcttttggtgctggttcct
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GGAAAGACACTGCGCTTCCTTCACCTGAATGGTCATCAGATCATATAGCACTCTTAGCAGAATTTCGGTGC---AAGCCTAGAGTTAGACGATGATACCCTAGgtatgagcaaagtactaaaatcattgattagttataccattgatttggttggaattacccatgttctttag-ataatagaacgccccatcaatattccttg--
upper sequence: GLYMA02G26620.2 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G118467_T01 (Zea mays), 5'ss of exon 11
---AGGACACAGCACTTCCTTCACCTGAATGGTCCTCAGATCACATAGCTCTCTTAGCCGAATTTCGCTGCTGCAAGAATAAATCTAGGCGTTGACAGTTAAGgtaggcaccatcctcaacccccccacccacatatagcttgt-ttgagaattattattggaaaag-atcaacggaagtgaactttcttttggtgctggttcct
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GAAAAGACACAGCTCTCCCATCCCCTGAATGGTCATCAGATCACATAGCACTCTTAGCTGAGTTCCGGTGC---AAGCCAAGAATCAGACGTTGACACATTAGgtatgttacaaaggaaatcagt--gttgtcatattgcttctattgcaactgaatgttgtttttttgttgacatgaatgatgttggattgtgttagagtaaat
upper sequence: GLYMA02G26620.2 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G043509_T01 (Zea mays), 5'ss of exon 11
---AGGACACAGCACTTCCTTCACCTGAATGGTCCTCAGATCACATAGCTCTCTTAGCCGAATTTCGCTGCTGCAAGAATAAATCTAGGCGTTGACAGTTAAGgtaggcaccatcctcaacccccccacccacat-atagcttgtttga---gaattattattggaaaagatcaacggaagtgaactttcttttggtgctggttcct
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GAAAAGACACAGCTCTTCCATCTCCTGGATGGTCATCAGATCACATAGCACTGTTAGCCGAGTTCCGGTGC---AAGCCTAGAATCAGAAGTTGACACATTAGgtatgttacacaggaaatcagtgccgtcatattgcttcttactggaactgcatgtttttttgttgacatgaatggtgttggattttaccgtgattgtata----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9903368|gb|BE612336.1|BE612336EST: TTAGCCGAATTTCGCTGCTGCAAGAATAAATCTAGGCGTTGACAGTTAAG GTATCTCCATGTGGAGTCATTGCAATGATCTGCTATGTATCAT
genomic: TTAGCCGAATTTCGCTGCTGCAAGAATAAATCTAGGCGTTGACAGTTAAGgtaggcacca ... tctttttcagGTATCTCCATGTGGAGTCATTGCAATGATCTGCTATGTATCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGACACAGCACTTCCTTCACCTGAATGGTCCTCAGATCACATAGCTCTCTTAGCCGAATTTCGCTGCTGCAAGAATAAATCTAGGCGTTGACAGTTAAGgtaggcaccatcctcaacccccccacccacatatagcttgtttgagaattattattggaaaagatcaacggaagtgaactttcttttggtgctggttcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaga