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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTACCAGgtataatctatgatccatattggtagtaactctgcttgaaatgttgtgtgttattgtcttcctgcagtttttgtcactttcctttgttgctacataaatgataaatgttgatctcaccttaacatgatctctttctctgtatgggattcctgataatttatttatttattttttatgtattaag

Basic information

species Glycine max
transcript GLYMA02G25240.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G25240.1 (Glycine max), 5'ss of exon 11
lower sequence: AT4G16630.1 (Arabidopsis thaliana), 5'ss of exon 11
GGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTACCAGgtataatctatgatccatattggtagtaactctgcttgaaatgttgtgtgttattgtcttcctgcagtttttgtcactttcctttgttgctacataaatgataaatgttgatctcaccttaacatgatctctttctctgtatgggattcctgataatttatttatttattttttatgtattaag
|| |||||||| |||||||||||||||||||| || | ||| ||||| || ||  |   |||||| |    | |||  |||||    |||  | || || || |     |             || |   ||||||   | || ||   || |      |  |||  | ||  | | |  ||                                                                
GGACTTGACATCATTGGTGTTCAAACAGTTATAAATTATGCTTGTCCTCGGGAAATAGACAGgtaaa---caagat--atatttcctgta-ttatgattaaattaaaaag-------------ctactagttttgt---tctctttaactgatgtgaggacaatatgttttcctttgattttgcag------------------------------------------------------------

upper sequence: GLYMA02G25240.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 11
GGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTACCAGgtataatctatgatccatattggtagtaactctgcttgaaatgttgtgtgttattgtcttcctgcagtttttgtcactttcctttgtt-gctacataaatgataaatgttgatctcaccttaacatgatctctttctctgtatgggattcctgataatttatttatttattttttatgtattaag
|| |||||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||||| ||| ||| | |  | ||     |   | | |||    | ||      | |||          | |||  |   || | ||| || | ||  |  |||                                                                                    
GGACTTGACATAATTGGTGTTCAAACAGTTATAAACTATGCATGTCCTCGTGATCTTACCAGgta-aatttattaactttttttccctt---tttccttcgtttttttaaatatgttgctaaaacaatgatttacttgtttgcatttattcgttatgttgatgtgc---------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254340268|gb|GR858393.1|GR858393
EST:     ATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTACCAG                         CTATGTTCATCGAGTGGGTCGTACTGCAAGAGCCGGA-GAGAAGGATATGC
genomic: ATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTACCAGgtataatcta ... atgtattaagCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCCGGAAGAGAAGGATATGC
EST: gi|254340269|gb|GR858394.1|GR858394
EST:     ATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTACCAG                         CTATGTTCATCGAGTGGGTCGTACTGCAAGAGCCGGAAGAGAAGGATATGC
genomic: ATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTACCAGgtataatcta ... atgtattaagCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCCGGAAGAGAAGGATATGC