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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAGgttgactaatataatgttgtctccttgcttcagatgtatccttatttcttagtatttattatactcatctttgatatcaatgtaaatcaagccttttttttattatcttctgtgaatcttccactggcttgtcttgatcaaagtttccttttttgtacactcaaaag

Basic information

species Glycine max
transcript GLYMA02G15070.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G15070.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os09g28570.3 (Oryza sativa), 5'ss of exon 11
ATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAGgttgac-taatataatgttgtctccttgcttca-gatgtatccttatttcttagtatttattatactcatctttgatatcaatgtaaatcaagccttttttttattatcttctgtgaatcttccactggcttgtcttgatcaaagtttccttttttgtacactcaaaag
 ||||  | || |||  |||||||||||| ||||||||||| || || ||||| ||||| ||||| ||||||||||| |||||||| || || ||||||    ||   |  | |||| || ||||| ||  |  | |   | |  | |  || ||  |  ||  |  ||| |  |   |||     |      | |    | ||  ||||      || |  ||  || |  ||     ||                        
GTTCCAGCCAAGCATCTTCTTCCGGTGCCAAGACCAGATCCAGAGGTCGTTGCTATGCTAACATCAGGATTGACTGCTTCAATTGCCCTTGAGAAGgttagtatacagttcttttgtttctttgctacataacatgtggctttgacctcatacttggtgaaccaacgtttaagtttggtgtggtctacatgaatataacttcattatctga----tttgcgttgatttctgctgcctttag------------------------

upper sequence: GLYMA02G15070.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G368058_T01 (Zea mays), 5'ss of exon 6
ATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAGgttgactaatataatgttgtctccttgcttcagatgtatc-cttatttctta-gtatttattatactcatctttg-atatcaatgtaaatcaagccttttttttattatcttctgtgaatcttccactggcttgtcttgatcaaagtttccttttttgtacactcaaaag
||| |  | |||  |  | |||| ||||| |||||||| || || || ||||| ||||| ||||| ||||||||||| || || ||||| |||||||||   |      || ||   |  ||  |||    || |  | |||  | |   | |||||     |  | ||   |||  | |  || || |   ||     ||| || ||||     || |    |  || |  | |||  | | | | ||| ||  |          
ATTTCAGCCAAAAGTCTTATTCCAGTGCCAAGACCAGACCCAGAGGTGGTTGCTATGCTAACATCAGGATTGACTGCATCCATCGCTCTTGAAAAGgttctgttcctccatatttcttagttttttccacggtttggcatatgccatgtatttttatctctattgtgttcacataagattcaaattccaagtttgaagatataattttct-----tccttgcttatctggattcgatttatgctgcatttcttccattag------

upper sequence: GLYMA02G15070.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G49670.1 (Arabidopsis thaliana), 5'ss of exon 11
ATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAGgttg-actaata--taatgttgtctccttgcttcagatgtatccttatttcttagtatttattatactcatctttgatatcaatgtaaatcaagccttttttttattatcttctgtgaatcttccactggcttgtcttgatcaaagtttccttttt-tgtacactcaaaag
 |  |||| || |||| |||||| || || ||||||||||| |||||||||||||||||||| |||||||| ||||| | ||| || || |||||||| |  ||||    |    ||  ||   || ||     || |  | |||||  | | |  | | | ||||| ||||       | |  || ||    |   | ||| || |||| | | |       |   || |||    ||   | |   | || ||   | ||| |  
GTATCTTCTAAGCATGTTCTTCCTGTTCCAAGACCAGATCCAGAAGTTGTTGCCATGCTTACCTCGGGATTAACTGCATTAATCGCCCTTGAAAAGgtcgtgctaacgagtgtcattaactgtctgttttcatcgt-ttttcatttcagactctcaaat-tcctcatttttg-------tatgtattaa----tagctgtatgatattct-taagttgctagttcaattatctctgacattttctttatcttatgggaattcacag-

upper sequence: GLYMA02G15070.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G49670.2 (Arabidopsis thaliana), 5'ss of exon 11
ATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAGgttg-actaata--taatgttgtctccttgcttcagatgtatccttatttcttagtatttattatactcatctttgatatcaatgtaaatcaagccttttttttattatcttctgtgaatcttccactggcttgtcttgatcaaagtttccttttttgtacactcaaaag
 |  |||| || |||| |||||| || || ||||||||||| |||||||||||||||||||| |||||||| ||||| | ||| || || |||||||| |  ||||    |    ||  ||   || ||     || |  | |||||  | | |  | | | ||||| |||| |||   | | |||                                                                                
GTATCTTCTAAGCATGTTCTTCCTGTTCCAAGACCAGATCCAGAAGTTGTTGCCATGCTTACCTCGGGATTAACTGCATTAATCGCCCTTGAAAAGgtcgtgctaacgagtgtcattaactgtctgttttcatcgt-ttttcatttcagactctcaaat-tcctcatttttg-tat--gtattaatag------------------------------------------------------------------------------

upper sequence: GLYMA02G15070.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv03s0063g00610.t01 (Vitis vinifera), 5'ss of exon 11
ATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAGgttgactaatataa-tgt-tgtc-tccttgcttcagatgt-----------atccttatttcttagtatttat-----tatactcatctttgatatcaatgt-----------aaatcaagccttttttttattatcttctgtgaatcttccactggcttgtcttgatcaaagtttccttttttgtacactcaaaag
 ||||||| || ||    ||||| ||| | ||||||||||| ||||||||||| ||||| || || ||| | || || ||||||||| ||||||||||    || |  || ||| |||| ||||||    |||| |           ||   | | | | | | |||||     || | ||| ||     || ||| |            |  |     | ||| || || || ||  | | |    || |   |||||||| ||  |   | ||||| || | |||   |  
GTTCCTTCCAAGCACATCCTTCCCGTGGCAAGACCAGATCCAGAAGTTGTTGCGATGCTAACCTCAGGACTTACAGCATCAATTGCTTTAGAAAAGgtatgttacttcaagtgtctgtcctccttgtccaagattttgttaattgcaatatatgtatgtaaatgtttatatatttacattcaactaattcattaattttctggccttctgatgctgtattctttctttttgtcatccattactgagacagttaattgtcttgttctgacaattcttttatgga-acttgtag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13125716|gb|BG316286.1|BG316286
EST:     TTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAG                         GCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGA
genomic: TTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAGgttgactaat ... cactcaaaagGCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGA
EST: gi|213602767|gb|DB968937.1|DB968937
EST:     TTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAG                         GCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGA
genomic: TTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAGgttgactaat ... cactcaaaagGCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGA
EST: gi|23051289|gb|BU577071.1|BU577071
EST:     TTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAG                         GCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGA
genomic: TTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAGgttgactaat ... cactcaaaagGCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGA
EST: gi|7926508|gb|AW832534.1|AW832534
EST:     TTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAG                         GCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGA
genomic: TTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAGgttgactaat ... cactcaaaagGCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGA
EST: gi|19935164|gb|BQ080194.1|BQ080194
EST:     TTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAG                         GCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGA
genomic: TTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAGgttgactaat ... cactcaaaagGCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGA