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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGACAAACGTTCAAAATTGCCGAGTTGGATACTCTCTCATTTACATGACGCCCACCTGAACTTGAGCACAGACATGGCTTTGCATGTAGCACGTGATgtatgtccttgtaattctggtttgacgcttgtgtagtcacttgcatacactacattgtactgaaatctcatggatgctagggcatcttgtttttgcttta...

Basic information

species Glycine max
transcript GLYMA02G09080.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G09080.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os05g05260.1 (Oryza sativa), 5'ss of exon 10
TCATGACAAACGTTCAAAATTGCCGAGTTGGATACTCTCTCATTTACATGACGCCCACCTGAACTTGAGCACAGACATGGCTTTGCATGTAGCACGTGATgtatgtccttgta-----attctggtttgacgcttgtgtagtcacttgcatacactacattgtactgaaatctcatggatgctagggcatcttgtttttgcttta
 ||||| ||||| || ||| ||||  | |||||||| || || |||||||| || ||||| ||  ||||||| || |||||||||||| |||| ||||| |||||| |    |     ||| |  ||||||   ||    ||   ||| ||   || ||  |||||| || ||  |      |     | |  |||| |   |  
CCATGATAAACGGTCTAAACTGCCTGGGTGGATACTGTCACACTTACATGATGCGCACCTAAATCTGAGCACTGATATGGCTTTGCATATAGCTCGTGAGgtatgttccataacatttatttttctttgactggtgctatgtagtttgaat-tgcttcaa-gtactgtaa-cttgtaatcatttaaagagcaagtttatctct--

upper sequence: GLYMA02G09080.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv07s0104g00060.t01 (Vitis vinifera), 5'ss of exon 11
TCATGACAAACGTTCAAAATTGCCGAGTTGGATACTCTCTCATTTACATGACGCCCACCTGAACTTGAGCACAGACATGGCTTTGCATGTAGCACGTGATgtatgtccttgtaattctggtttgacgcttgtgtagtcacttgcatacactacattgtactgaaatctcatggatgctagggcatcttgtttttgcttta----
|||||| ||||| || ||||||||  | ||||| || || ||||||| ||| || |||||||| |||||||| ||||||||||||||| | ||||| || |||||||  |   |||  |  |  ||  |  ||   | | |  | |     | |   |     |||||    ||    |  | ||  |    | |    |    
TCATGATAAACGCTCTAAATTGCCTGGGTGGATTCTGTCACATTTACGTGATGCACACCTGAATTTGAGCACTGACATGGCTTTGCATATTGCACGAGAGgtatgtctct--tattgcgtgtccacaatcttgatattattgaccttgg--aaaacatgagataatctgtcagacttgaaagtatggttcaataggagcatgtc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336015|gb|CO979881.1|CO979881
EST:     ACGCCCACCTGAACTTGAGCACAGACATGGCTTTGCATGTAGCACGTGAT                         TTCCTCAGGAAAATGGCCCAGCCATATGATAAAACTGGTGGCACTGGCAGG
genomic: ACGCCCACCTGAACTTGAGCACAGACATGGCTTTGCATGTAGCACGTGATgtatgtcctt ... ttgaatgcagTTCCTCAGGAAAATGGCCCAGCCATATGATAAAACTGGTGGCACTGGCAGG