Sequence
atgc intronic sequence ATGC exonic sequenceACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAGCATGGACTTTGTTCTCAATATGTACAGGATTTATATATTTTCAAGAATATCAGgtacttcctctttaacttgatacacacaggtagcctttgcctttcatgggcactctaagaagatttaatcatattattgaagaaaactaattaaatatca...
Basic information
species | Glycine max |
transcript | GLYMA02G07510.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G07510.2 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os02g31874.2 (Oryza sativa), 5'ss of exon 10
ACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAGCATGGACTTTGTTCTCAATATGTACAGGATTTATATATTTTCAAGAATATCAGgt-acttcctcttt------aacttgatacacacaggtagcctttgcctttcatgggcactctaagaagatttaatcatattattgaagaaaactaattaaatatca
||||| | ||||||||||| || |||||||| ||||||||||| || ||||| || || || || || ||||||||| | || |||||||||||||| || | || || ||| | | || || | | | | || ||||| | ||||| || || || | |
CCTGTCTCTTTTTGATGCAATACTGATTGTTCCAATGTTTCAGATTGCTTGGACCTTTTTTTCTATTTGCACAGGATTTGTGTACTTTCAAGAATATCAAgtgagtttctgtttgtaaatattatcgtaagcatgagaatcttgtgttgctcatga-taaactaagggttttggattgccttcattag-------------------
upper sequence: GLYMA02G07510.2 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G477146_T01 (Zea mays), 5'ss of exon 10
ACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAGCATGGACTTTGTTCTCAATATGTACAGGATTTATATATTTTCAAGAATATCAGgtac-ttcctctttaacttgat---acacacaggtagcctttgcctttcatgggcactctaagaagatttaatcatattattgaagaaaactaattaaatatca
|||||||| ||||||||||| || |||||||| |||||||| || || ||||| || ||||| || |||||||||||| | || |||||||||||||| ||| ||||| ||| | || | | | || ||| |||| | | || |||| | | | ||
GCTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATTTGTACAGGATTTGTTTACTTTCAAGAATATCAAgtaagttcctgtttgtgataatcggataatgaagtgaatcatgcatttcctcattataaaccgatgattctgtttttctgctgtcag-----------------
upper sequence: GLYMA02G07510.2 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G144254_T03 (Zea mays), 5'ss of exon 7
ACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAGCATGGACTTTGTTCTCAATATGTACAGGATTTATATATTTTCAAGAATATCAGgtac-ttcctctttaacttgatacacacaggtagcctttgcctttcatgggcactctaagaagatttaatcatattattgaagaaaactaattaaatatca
||||||| ||||||||||| || |||||||| |||||||| || || ||||| || ||||| || |||||||||||| | || |||||||||||||| ||| ||||| ||| | | || | | | | | | ||| | || | | | | || | || | |
GTTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATCTGTACAGGATTTGTTTACTTTCAAGAATATCAAgtaggttcctgtttgagataatgggataatgaaaagtgaatcatgcattg---cttaattagaaactgggtattctgtttttcctctgtcag---------
upper sequence: GLYMA02G07510.2 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM5G837932_T01 (Zea mays), 5'ss of exon 1
ACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAGCATGGACTTTGTTCTCAATATGTACAGGATTTATATATTTTCAAGAATATCAGgtac-ttcctctttaacttgat---acacacaggtagcctttgcctttcatgggcactctaagaagatttaatcatattattgaagaaaactaattaaatatca
||||||| ||||||||||| || |||||||| |||||||| || | ||||| || ||||| || |||||||||||| | || |||||||||||||| ||| ||| | |||| | || | | | || ||| |||| | | || |||| | | | ||
GTTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGTTTGGACCTTCTTCTCTATTTGTACAGGATTTGTTTACTTTCAAGAATATCAAgtaagttcttgtttattataatcggataatgaagtgaatcatgcatttcctaattataaactgatgattctgtttttctgctgtcag-----------------
upper sequence: GLYMA02G07510.2 (Glycine max), 5'ss of exon 11
lower sequence: AT3G26670.1 (Arabidopsis thaliana), 5'ss of exon 10
ACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAGCATGGACTTTGTTCTCAATATGTACAGGATTTATATATTTTCAAGAATATCAGgtacttcctct--ttaacttgatacacacaggtagcctttgcctttcatgggcact--------ctaagaagatt----taatcatattattgaagaaaactaa----ttaaatatca--------------------------------
| |||| | | |||||||||||| || ||||| ||||||||||| || |||||||| ||||| || |||||||||| || || |||||||| | |||||| | || | || ||| | | |||| | || | | || ||| |||| | ||||| || | |||| | ||| ||
ATTGTCTCTATATGATGCAATTCTCATAGTTCCAATGTTTCAGATTGCTTGGACTTTCTTCTCCATCTGTACAGGATGCATTTACTTTCAAGAGTTTCAGgttcatctattgactacattgtgatgcttttcctctcttttctttatcttcgggctaatacggatctagatgattagtttgatcattttgtcacagaatggtgtgggtttagggatagtcgcttagataattttcttcttccttaaacag
upper sequence: GLYMA02G07510.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 10
ACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAGCATGGACTTTGTTCTCAATATGTACAGGATTTATATATTTTCAAGAATATCAGgtacttcctctttaacttgata---cacacaggtagcctttgcctttcatgggcactctaagaagatttaat--catattattgaagaaaactaattaaatatca
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GTTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAAATTGCTTGGACTTTCTTCTCTATTTGTACAGGATTTGTATACTTTCAGGAATATCAGgtgctctctctctctctctctctctctcttatagaacctagtgactgaaaatttaacttaggtcaatttggctccattttacttgtgctgctcactggga-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151399979|gb|EV269850.1|EV269850EST: CAAGAATATCAG GTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTG
genomic: CAAGAATATCAGgtacttcctc ... ctgaaagcagGTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAGCATGGACTTTGTTCTCAATATGTACAGGATTTATATATTTTCAAGAATATCAGgtacttcctctttaacttgatacacacaggtagcctttgcctttcatgggcactctaagaagatttaatcatattattgaagaaaactaattaaatatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaaaa