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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAGgtactataatttgataattattttatggttttatataattcaaggtatgcattgcagaggataatacgaaactttgcttttgagaag

Basic information

species Glycine max
transcript GLYMA02G07510.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07510.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 11
GTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAGgtactataatttgataattattttatggttttatataattcaaggtatgcattgcagaggataatacgaaactttgcttttgagaag
||||||||| |||||||||||||||||||||| || |||||||||| |||||| || |||||||| |||||||||||||||||  |||||||||      ||| | ||  | |||     |||||| |    | | ||   || | |    |   | | ||| ||| |          
GTATTTGATACATTAAGGACAACAATGTTTATACTAGGAATGATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAGgtat-----tttaacaaagactttc--aatttatagag---aggataaagatggaaactaac--tgcaaaatttttcag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151399979|gb|EV269850.1|EV269850
EST:     GATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAG                         TTTCAGGTCCTGAGACTAAAGATAGTTCTTTGGATTCCATGGTGTCTTCTG
genomic: GATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAGgtactataat ... ttttgagaagTTTCAGGTCCTGAGACTAAAGATAGTTCTTTGGATTCCATGGTGTCTTCTG