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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTCAGGGAAGATCTACCTGGGCTGCTTTTTGGTTGATTTTACTTGGCGTAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGGgtaagctcagctgctttctctcattctggttttgttattggatacttaatgctgaaattctgtagcattagagcgtgctgagttgcccaacattacaagc...

Basic information

species Glycine max
transcript GLYMA01G45380.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23733471|gb|BU764931.1|BU764931
EST:     TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGG                         CAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
genomic: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGGgtaagctcag ... ggttttgcagCAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
EST: gi|213605993|gb|DB980145.1|DB980145
EST:     ACAAGTACAGAATAAGG                         CAATACATGGACCT-AGAAATCAGAGCAATCATGGCGCAATATATGCCCTT
genomic: ACAAGTACAGAATAAGGgtaagctcag ... ggttttgcagCAATACATGGA-TTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTT
EST: gi|151400336|gb|EV270150.1|EV270150
EST:     TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGG                         CAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
genomic: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGGgtaagctcag ... ggttttgcagCAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
EST: gi|16282736|gb|BI945179.1|BI945179
EST:     TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGG                         CAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
genomic: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGGgtaagctcag ... ggttttgcagCAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
EST: gi|12773548|gb|BG238475.1|BG238475
EST:     TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGG                         CAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
genomic: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGGgtaagctcag ... ggttttgcagCAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
EST: gi|209710069|gb|BW658871.1|BW658871
EST:     TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGG                         CAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
genomic: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGGgtaagctcag ... ggttttgcagCAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
EST: gi|298184325|gb|HO029538.1|HO029538
EST:     TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGG                         CAATACATGGATTCAGAAATCAGAGTAATCATGGCGCAATATATGCCCTTG
genomic: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGGgtaagctcag ... ggttttgcagCAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
EST: gi|214007153|gb|DB985801.1|DB985801
EST:     TAGTTATGATTGCTGGTGGGGCAATCCTTGTGTACAAGTACAGAATAAGG                         CAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
genomic: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGGgtaagctcag ... ggttttgcagCAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
EST: gi|193660132|gb|FK603812.1|FK603812
EST:     TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGG                         CAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG
genomic: TAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGGgtaagctcag ... ggttttgcagCAATACATGGATTCAGAAATCAGAGCAATCATGGCGCAATATATGCCCTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGTCAGGGAAGATCTACCTGGGCTGCTTTTTGGTTGATTTTACTTGGCGTAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTACAGAATAAGGgtaagctcagctgctttctctcattctggttttgttattggatacttaatgctgaaattctgtagcattagagcgtgctgagttgcccaacattacaagc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG