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TACTGAAGTTCCCTCGGATTTTTGATCCATGGGGTGGTTACAGCATCATAGGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttcctccctcctttctaccccttatcccttgcatgacttatgtcaacccaaaacttgatttgaatgacaaggtccaaattttatggattggaa...
species | Glycine max |
transcript | GLYMA01G42940.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAG GTACGATTGGCTGGCAAACAAGAGCCTT-TATTTGGATATTTCTTGTGGGCEST: gi|254332376|gb|GR846421.1|GR846421
genomic: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttc ... gtttttgcagGTACGATTGGCTGGCAAACAAGAGCCTTAGAAGTGGATATTTCTTGTGGGC
EST: ATCCTGTTACCAGGAATGCTGGTGGCATTCTCACTCAG GTACGATTGGCTGGCAAACAAGAGCCTTAGAAGTGGATATTTCTTGTGGGCEST: gi|192332460|gb|FK024221.1|FK024221
genomic: ATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttc ... gtttttgcagGTACGATTGGCTGGCAAACAAGAGCCTTAGAAGTGGATATTTCTTGTGGGC
EST: ATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAG GTACGATTGGCTGGCAAACAAGAGCCTTAGAAGTGGATATTTCTTGTGGGCEST: gi|151395947|gb|EV265824.1|EV265824
genomic: ATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttc ... gtttttgcagGTACGATTGGCTGGCAAACAAGAGCCTTAGAAGTGGATATTTCTTGTGGGC
EST: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAG GTACGATTGGCTGGCAAACAAGAGCCTTAGAAGTGGATATTTCTTGTGGGCEST: gi|151400533|gb|EV270347.1|EV270347
genomic: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttc ... gtttttgcagGTACGATTGGCTGGCAAACAAGAGCCTTAGAAGTGGATATTTCTTGTGGGC
EST: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAG GTACGATTGGCTGGCAAACAAGAGCCTTAGAAGTGGATATTTCTTGTGGGCEST: gi|192332461|gb|FK024222.1|FK024222
genomic: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttc ... gtttttgcagGTACGATTGGCTGGCAAACAAGAGCCTTAGAAGTGGATATTTCTTGTGGGC
EST: ATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAG GTACGATTGGCTGGCAAACAAGAGCCTTAGAAGTGGATATTTTTTGTGGGCEST: gi|7284908|gb|AW597395.1|AW597395
genomic: ATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttc ... gtttttgcagGTACGATTGGCTGGCAAACAAGAGCCTTAGAAGTGGATATTTCTTGTGGGC
EST: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAG GTACGATTGGCTGGCAAACAAGAGCCTTAGAAGTGGATATTTCTTGTGGGC
genomic: GGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttc ... gtttttgcagGTACGATTGGCTGGCAAACAAGAGCCTTAGAAGTGGATATTTCTTGTGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTGAAGTTCCCTCGGATTTTTGATCCATGGGGTGGTTACAGCATCATAGGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttttatttcctccctcctttctaccccttatcccttgcatgacttatgtcaacccaaaacttgatttgaatgacaaggtccaaattttatggattggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacccc