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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCATATAATGTTGGGGGTCATACAATTAGTGCAGACACAATACAGAATACAATACTAAAGTGCCGGATGTCTCGCCCGGGACAGgtgaatcctatgttcccaattacttcccttaaaaaaaacagaaaaatacatttgaagtgccattcaaatataccttttttcatgcaaagcatttgttgtttttttcattctagacattggtgatttacatggttgcttctttaaacttgcttcctcttgtag

Basic information

species Glycine max
transcript GLYMA01G38680.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38680.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv00s0207g00120.t01 (Vitis vinifera), 5'ss of exon 11
GCTGCATATAATGTTGGGGGTCATACAATTAGTGCAGACACAATACAGAATACAATACTAAAGTGCCGGATGTCTCGCCCGGGACAGgt-gaatcctatgttcccaattacttcccttaaaaaaaacagaaaaatacatttgaagtgccattcaaatataccttttttcatgcaaagcatttg-ttgtttttttcattctagacattggtgatttacatggttgcttctttaaacttgcttcctcttgtag
            ||||| ||||| ||||| ||||||||||||||||||||| | || ||    || || || ||||| || |||||||| | |||| |||   | | |    ||  || || |    |      ||  | |        || |    ||| ||||| |   ||   | ||||| ||   | | | ||||    |  ||   || |  | |                               
------------GTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAGGTTGGATCCCATGCCACTATTC---TCAgttcaagattttaagctcttatgtatattaacgtatactttaatatcttttgtatggccgtgtatttgcttacatatgtgattc----ccctgc--atctgaacga------------------------------

upper sequence: GLYMA01G38680.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 8
GCTGCATATAATGTTGGGGGTCATACAATTAGTGCAGACACAATACAGAATACAATACTAAAGTGCCGGATGTCTCGCCCGGGACAGgt-gaatcctatgttcccaattacttcccttaaaaaaaacagaaaaatacatttgaagtgccattcaaatataccttttttcatgcaaagcatttgttgtttttttcattctagacattggtgatttacatggttgcttctttaaacttgcttcctcttgtag
||||| ||||||||||| ||||| ||||| ||||||||||||||||||||| | || ||    || || || ||||| || |||||||| | |||| |||   | | |    ||  || || |    |      ||  | |        || |    ||| ||||| |   ||   | ||||| |    |                                                            
GCTGCCTATAATGTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAGgttggatcccatgccactattc---tcagttcaagattttaagctcttatgtatattaacgtatactttaatatcttttgtatggccgtgtatttgcttacat------------------------------------------------------------