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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTAATGGAATACCTTGACATTCCAACTACTAAGGTCATGGCAACTGTTATTATTCAAAGCATTATGAAAAACGGAACACGCATTTCTACTTCAGAAAAGgtatgttatatcttacttgtctgattttttgtgagtttttattataacatagcatgatttgcttgtag

Basic information

species Glycine max
transcript GLYMA01G36870.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36870.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv04s0023g03870.t01 (Vitis vinifera), 5'ss of exon 12
CGTAATGGAATACCTTGACATTCCAACTACTAAGGTCATGGCAACTGTTATTATTCAAAGCATTATGAAAAACGGAACACGCATTTCTACTTCAGAAAAGgtatgttatatct-----tacttgt-ctgattttttgtgagtttttatta-taacatagcatgatttgct---tgtag
 || |||||||| |||||||    ||| | ||| || |||||||  ||||| |||||||||||||||||||||  |||  | ||| ||||| | |||||||||||||   |||     |  |||| ||| | ||||  | ||  |   || | |  |  ||  | ||| |   |||||
TGTCATGGAATATCTTGACAACAGAACAAATAAAGTGATGGCAATCGTTATAATTCAAAGCATTATGAAAAACAAAACGTGTATTGCTACTGCTGAAAAGgtatgtttcttctattgatgtttgttctgttcttttcagtgtcctccctaatcatgtgccactacttgttctatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207847864|gb|GD818791.1|GD818791
EST:     TTATTCAAAGCATTATGAAAAACGGAACACGCATTTCTACTTCAGAAAAG                         GTTGAAGCATTGTTTGAACTGATAAAGGGGCTTATCAAGGATTCTGATGGA
genomic: TTATTCAAAGCATTATGAAAAACGGAACACGCATTTCTACTTCAGAAAAGgtatgttata ... ttgcttgtagGTTGAAGCATTGTTTGAACTGATAAAGGGGCTTATCAAGGATTCTGATGGA
EST: gi|207779059|gb|GD754130.1|GD754130
EST:     TTATTCAAAGCATTATGAAAAACGGAACACGCATTTCTACTTCAGAAAAG                         GTTGAAGCATTGTTTGAACTGATAAAGGGGCTTATCAAGGATTCTGATGGA
genomic: TTATTCAAAGCATTATGAAAAACGGAACACGCATTTCTACTTCAGAAAAGgtatgttata ... ttgcttgtagGTTGAAGCATTGTTTGAACTGATAAAGGGGCTTATCAAGGATTCTGATGGA
EST: gi|208213463|gb|GE014160.1|GE014160
EST:     TTATTCAAAGCATTATGAAAAACGGAACACGCATTTCTACTTCAGAAAAG                         GTTGAAGCATTGTTTGAACTGATAAAGGGGCTTATCAAGGATTCTGATGGA
genomic: TTATTCAAAGCATTATGAAAAACGGAACACGCATTTCTACTTCAGAAAAGgtatgttata ... ttgcttgtagGTTGAAGCATTGTTTGAACTGATAAAGGGGCTTATCAAGGATTCTGATGGA