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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCGTTCCAAATAACATATATCTTGTGGATATGGgtaatgaagttcattacactatcttgactattggctaatgtgttttagttgtctatattcctgaataataaaagaacaattttttatttgcag

Basic information

species Glycine max
transcript GLYMA01G36170.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36170.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 12
AATGCGTTCCAAATAACATATATCTTGTGGATATGGgtaatgaagttcattacactatctt-gactattggctaatg--tgttttagttgtctatattcctgaataat-----------aaaagaacaattttttatttgcag-----
||||||||||| ||||||||| || ||||||||||||||||||| ||  |  |||||| ||  | ||||  ||  |   | |||   ||| | |  |   | ||| ||           ||||     | ||||| ||  | |     
AATGCGTTCCAGATAACATATTTCCTGTGGATATGGgtaatgaa-ttgttcccactattttcaattattaactttttgttttttctcttgaccaactattttaattatggccaacgcctaaaaatgtgaattttttttacctgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192334106|gb|FK026263.1|FK026263
EST:     AATGCGTTCCAAATAACATATATCTTGTGGATATGG                         TATTCTTTTGGGTTGAGAAACTGTTTCCGTACTGACTACAAGCTTGCAGTA
genomic: AATGCGTTCCAAATAACATATATCTTGTGGATATGGgtaatgaagt ... ttatttgcagTATTCTTTTGGGTTGAGAAACTGTTTCCGTACTGACTACAAGCTTGCAGTA