1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGGCTCCCCAGATAATTTAGAAAGCTTGAGGATTCGTCGTCTTTATGCTCATTTAGCTGACGCAAAATGCCGAGCTGCTGTTCAACTTTTATTGATTCAGgtaattttatattctgttactccaaatatctgccttgttgttgaaagaaattatgaaggagcccaagaacggtagctgttgcatttagtttattcagaaa...
species | Glycine max |
transcript | GLYMA01G34560.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATTTAGCTGACGCACCATGCCGAGCTGCTGTTCAACTTTTATTGATTCAN GCGGTGATGGAGATCTATAACATGTATCGCCCTCACCTTTCAGCAAAAGCCEST: gi|14012075|gb|BG727006.1|BG727006
genomic: ATTTAGCTGACGCAAAATGCCGAGCTGCTGTTCAACTTTTATTGATTCAGgtaattttat ... aaattggcagGCGGTGATGGAGATCTATAACATGTATCGCCCTCACCTTTCAGCAAAAGCC
EST: ATTTAGCTGACGCAAAATGCCGAGCTGCTGTTCAACTTTTATTGATTCAG GCGGTGATGGAGATCTATAACATGTATCGCCCTCACCTTTCAGCAAAAGCCEST: gi|6914523|gb|AW396053.1|AW396053
genomic: ATTTAGCTGACGCAAAATGCCGAGCTGCTGTTCAACTTTTATTGATTCAGgtaattttat ... aaattggcagGCGGTGATGGAGATCTATAACATGTATCGCCCTCACCTTTCAGCAAAAGCC
EST: ATTTAGCTGACGCAAAATGCCGAGCTGCTGTTCAACTTTTATTGATTCAG GCGGTGATGGAGATCTATAACATGTATCGCCCTCACCTTTCAGCAAAAGCC
genomic: ATTTAGCTGACGCAAAATGCCGAGCTGCTGTTCAACTTTTATTGATTCAGgtaattttat ... aaattggcagGCGGTGATGGAGATCTATAACATGTATCGCCCTCACCTTTCAGCAAAAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCTCCCCAGATAATTTAGAAAGCTTGAGGATTCGTCGTCTTTATGCTCATTTAGCTGACGCAAAATGCCGAGCTGCTGTTCAACTTTTATTGATTCAGgtaattttatattctgttactccaaatatctgccttgttgttgaaagaaattatgaaggagcccaagaacggtagctgttgcatttagtttattcagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagaaa