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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGGAGCGACGCTCATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAGgtcagtgtagcctttatgatacatttccgaatggatactatgtgtagtagtttacttttaatatggccgccattgtgattcaacatttatgttaattttt...

Basic information

species Glycine max
transcript GLYMA01G30400.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G30400.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 5'ss of exon 11
GTGGGGAGCGACGCTCATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAGgtcagtgtagcctttatgatacatttccgaatggata-ctatgtgtagtagtttacttttaatatggccgccattgtgattcaacatttatgttaattttt---
 |||||||| || || ||||||||||| || |||||||| || || |||||||||||||| || |||| ||| |   || |    |    ||| |  |   || || |  | |  |  |    | | |||       |    | |  ||   |||||||  ||   |   
ATGGGGAGCTACTCTAATGAACTCTTTCCTCTTCAATGTCGGCCTCATTCTTCTTTGTTCAATCAGgtaagtct---ctctggtctcttcttctgcctttgtatctgttgggatcaagtgcactctgataaacggatctagatcaagca-tgtttatgtgcatacattaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15663627|gb|BI700998.1|BI700998
EST:     ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAG                         TGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
genomic: ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAGgtcagtgtag ... accttttcagTGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
EST: gi|7924521|gb|AW830547.1|AW830547
EST:     ATGAACTCTNTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAG                         TGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
genomic: ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAGgtcagtgtag ... accttttcagTGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
EST: gi|16344579|gb|BI970174.1|BI970174
EST:     ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAG                         TGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
genomic: ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAGgtcagtgtag ... accttttcagTGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
EST: gi|9204679|gb|BE330903.1|BE330903
EST:     ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAG                         TGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
genomic: ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAGgtcagtgtag ... accttttcagTGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
EST: gi|16345834|gb|BI971429.1|BI971429
EST:     ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAG                         TGTGATCCAGTTCTGCTCCACAGCATTTGCGTACTATGCTCAAGCAACTGC
genomic: ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAGgtcagtgtag ... accttttcagTGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
EST: gi|14991711|gb|BI317384.1|BI317384
EST:     ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAG                         TGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
genomic: ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAGgtcagtgtag ... accttttcagTGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
EST: gi|17022512|gb|BM093546.1|BM093546
EST:     ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAG                         TGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
genomic: ATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCTTCTTTGTTCCATTAGgtcagtgtag ... accttttcagTGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC