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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATACTTTTAAGTTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTGAAATCAgtaagttactttgcagtacagtaattgcatattcccaagtcctaaccatttttcttgtcattttgaatatttaatgggtttttactgttgggctttcaaacttttctatgcag

Basic information

species Glycine max
transcript GLYMA01G20810.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G20810.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os03g50230.1 (Oryza sativa), 5'ss of exon 10
AATACTTTTAAGTTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTGAAATCAgtaagttactttgcagtacagt-------aattgcata---ttcccaagtcctaaccatttttcttgtcattttgaatatttaatgggt--------ttttactg-ttgggctttcaaacttttctatgcag---------------------------
|||    | ||| | |||||||| |||| ||| |||| |||||| || |||||  | ||||| ||||||||||| ||||| || || || |||||||| ||| |||||| |    || ||||       | |||  ||   |||   | | | |  |  ||||||| |    |  ||     ||    |        ||| | || ||||  | | ||   |||  |  |||                           
AATTTGCTGAAGCTGTGTGACTTCGGTAGTGCTATGTCTGCTGGAAATAATGAGATCACACCGTATCTTGTGAGCCGCTTCTACCGGGCACCTGAAATAAgtgagttacatacttgttcagtgttccttatttgactatctttcttgacttcgacactgttttcttttgcagtcaaactcaaaacaaatcccctctttttcaatgcttggtttcttaatggtttgcagacagattagtgatttcttgttcttcctgcag

upper sequence: GLYMA01G20810.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os12g44330.2 (Oryza sativa), 5'ss of exon 9
AATACTTTTAAGTTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTGAAATCAgtaagttactttgcagtacagtaattgcatattcccaagtcctaaccatttttct---tgtcattttgaatatttaatgggtttttactgttgggctttcaaacttttctatgcag
|||    | ||| | ||||| ||||| ||||| ||| ||||||| |  || || |||||||| ||||||||||| || || |||||||| ||||| || ||| |||| |||| |      | | || ||| ||     ||  | |  ||| |||    ||| ||| ||  |   || |   | |   ||| ||  |     || |||||| |||||
AATGTGCTGAAGCTCTGTGATTTTGGCAATGCAATGCTTGCTGGAATGAACGAGGTTACACCTTATCTTGTGAGCCGTTTCTATCGTGCACCTGAGATAAgtgagttccttttc----tcgcactt-cattttgttgtgtattcaatattcttcctactgttattctgtctccatactacatgtggtctgatgcac-----aatttttct-tgcag

upper sequence: GLYMA01G20810.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G151236_T03 (Zea mays), 5'ss of exon 8
AATACTTTTAAGTTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTGAAATCAgtaagttactttgcagtacagtaattgcatattcccaagtcctaaccatttttcttgtcat-tttgaatattta-atgggtttttactgttgggctttcaaacttttctatgcag----------------------
|||    | ||| | ||||| ||||| ||||| ||| |||||||||  ||||||||||| || |||||||| || || || ||||| || ||||| |||||| ||||  ||     | || |  ||  | |||  |   || ||   | |  || | |  | | || |||| || ||   | | ||    |     |  | |  | | ||||                         
AATGTGCTCAAGCTATGTGATTTTGGGAATGCTATGCTTGCTGGTATGAATGAAGTTACGCCTTATCTTGTTAGCCGTTTCTATCGGGCACCTGAGATCAgtgagttctttcatcctgcaatgtttttagattttctt-tcttacttagtactcatatgttgtctgtatatatatatatatatatatatatatatatatatatatatatatgtgacaactaacatgttttcttgcag

upper sequence: GLYMA01G20810.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G13350.1 (Arabidopsis thaliana), 5'ss of exon 9
AATACTTTTAAGTTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTGAAATCAgtaagttactttgcagtacagtaattgcatattcccaagtcctaaccatttttcttgtcattttgaatatttaatgggtttttactgttgggctttcaaacttttctatgcag
|| || || ||| ||||||||||||||| ||| ||||||||||||| ||| |||||||||||||||||||| |||||||| ||  | || || ||||| |||||||| |  ||   | | ||  |   |     | |   | |    || |||| || |    || || ||  ||   |   ||  | ||  || ||    |||||  || ||
AACACGTTAAAGCTTTGTGACTTTGGTAGTGCAATGTTTGCTGGTACAAACGAAGTTACACCATATCTTGTTAGTCGCTTCTACAGAGCTCCAGAAATAAgtaagttccactgt--tgctgttgtcttaatcatcta---cttgg--atatttcatggc----tgtatgttctatta-taactaaagctgtactctc--ttttttcattgtag

upper sequence: GLYMA01G20810.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G25840.1 (Arabidopsis thaliana), 5'ss of exon 9
AATACTTTTAAGTTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTGAAATCAgtaagttactttgcagtacagtaattgcatattcccaagtcctaaccatttttcttgtcattttgaatatttaatgg--gtttttactgttgggctttcaaacttttctatgcag
|||   || ||| ||||||| ||||||||||| |||||||| || ||||| ||||||||||| |||||||| |||||||||||  |  |||||||||| |||||||  | |            |||     ||   |||     |  | ||||| | |  |   |||||| | |  |  | || || | ||    || ||               
AATGTCTTAAAGCTTTGTGATTTTGGTAATGCAATGTTTGCAGGCAAAAACGAAGTTACACCGTATCTTGTTAGTCGCTTTTACAGATCCCCTGAAATTAgtaagtatcat------------attttgggttgtaaag-----aggacttttcat-tggtgaagaatatgtgactgaagcttctattctttccattgcag--------------

upper sequence: GLYMA01G20810.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv01s0011g03350.t01 (Vitis vinifera), 5'ss of exon 9
AATACTTTTAAGTTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTGAAATCAgtaagttactttgcagtacagta--attgcatattcccaagtcctaaccatttttcttgtcattttgaatatttaatgggtttttactgttgggctttcaaacttttctatgcag---------------------------
|||    | ||  | ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || |||||||  | ||   | ||  |    |||  |  |   || |  | |  ||  |  |  | | || |    |||      |  ||| | ||||    |      | |  |  ||                            
AATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATCGTGCCCCTGAGATAAgtaagtcccattctcgaaccatcccgttgatttgtttgaaatgattaatataatcttctttagttaggtagtttgccaaataattatttttggagaatgctgtctcttaaatcatttagtctctaattctttccttctgcag