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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGAAAATCTTCGAGTTGTCTTGACAGATGGTGCTGCCCATGCTGTTGATTCCAGTGAACTTGCGTTTAAGTTGGCTTCTATCTATGCTTTTAGACAGgtccttttcatttctgttatccatatttcattttataaagacatcgcacatatacccatcactcccagtcttcatctattgattccttcagtgattgactaataattctttgataatttgtggtgcttttgtaacag

Basic information

species Glycine max
transcript GLYMA01G14800.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G14800.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os03g36780.1 (Oryza sativa), 5'ss of exon 16
AGTTGAAAATCTTCGAGTTGTCTTGACAGATGGTGCTGCCCATGCTGTTGATTCCAGTGAACTTGCGTTTAAGTTGGCTTCTATCTATGCTTTTAGACAGgtc---cttttcatttctgt-tatccatatttcattttataaagacatcgcacatatacccatcact-cccagtcttcatctattgattccttcagtgattgactaataattctttgataatttgtggtgcttttgtaacag
 || |||||| ||||| ||||  |||| ||||||||| | ||||| || |||||||| |||||||| |||||||| ||||||||||||||||||||||||||    ||| | || | |||  |  ||   ||| ||| |   | |||  |    || |   || |     ||    | ||  |||||||   ||  |  ||| ||     ||                              
TGTGGAAAATATTCGAATTGTGCTGACTGATGGTGCTTCACATGCAGTGGATTCCAGCGAACTTGCTTTTAAGTTAGCTTCTATCTATGCTTTTAGACAGgtgagacttgttatatttgtacaatcagcattc-tttcaagtaaacagtgacattagagtgatgaaaatacaaatcttataaattgatttgctcctt--ttgtctctccttttgccag------------------------

upper sequence: GLYMA01G14800.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G056393_T02 (Zea mays), 5'ss of exon 16
AGTTGAAAATCTTCGAGTTGTCTTGACAGATGGTGCTGCCCATGCTGTTGATTCCAGTGAACTTGCGTTTAAGTTGGCTTCTATCTATGCTTTTAGACAGgtccttttcatttctgttatccatatttcattttataaagacatcgcacatatacccatcactcccagtcttcatctattgattccttcagtgattgactaataattctttgataatttgtggtgcttttgtaacag
 ||||||||| |  || |||| ||||| ||||| ||| | |||   || ||||||||||||||||| |||||| | ||| |||||||||||||| |||||||    |  || |  |  ||   |    |  ||| |||  |  ||     | || |    |   | ||| |||  | ||   ||||||   |  ||    |                                    
TGTTGAAAATTTAAGAATTGTATTGACTGATGGGGCTTCACATCAGGTGGATTCCAGTGAACTTGCTTTTAAGCTAGCTGCTATCTATGCTTTTCGACAGgtgagctatatcttggagatgggtggcactgtttctaatcaactctggt-tgtaacatgaatatctagtgttctacaatgttttccttt--ttctttttcag-----------------------------------

upper sequence: GLYMA01G14800.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 16
AGTTGAAAATCTTCGAGTTGTCTTGACAGATGGTGCTGCCCATGCTGTTGATTCCAGTGAACTTGCGTTTAAGTTGGCTTCTATCTATGCTTTTAGACAGgtccttttcatt-tctgttatccatat---ttcattttataaagacatcgcacatatacccatca---ctcccagtcttcatctattgattccttcagtgattgactaataattctttgataatttgtggtgcttttgtaacag---------------
|||||||||| ||||  | || || ||||| ||||||||||||||||| ||||| ||||||||||| |||||||| ||| | || |||||||||||||||||  || || |   ||| |  | |  |   ||  ||    ||| | || ||||| ||  |  | |    |   |  | || ||| ||  ||  |        ||     ||   | |   |    ||      |||   |                   
AGTTGAAAATATTCGTATCGTTTTAACAGACGGTGCTGCCCATGCTGTGGATTCTAGTGAACTTGCATTTAAGTTAGCTGCAATTTATGCTTTTAGACAGgtttttctcttggcctgatgcctacgtgaatttgttggtaaaatagattgcacaaatttcttttaggcttttaacccctcttctttttttttttctcaaagctgtgctttaccccctcattttactgcaagattttcacattgctgctttatggaacag

upper sequence: GLYMA01G14800.1 (Glycine max), 5'ss of exon 11
lower sequence: EFJ36205 (Selaginella moellendorffii), 5'ss of exon 16
AGTTGAAAATCTTCGAGTTGTCTTGACAGATGGTGCTGCCCATGCTGTTGATTCCAGTGAACTTGCGTTTAAGTTGGCTTCTATCTATGCTTTTAGACAGgtccttttcatttctgttatccatatttcattttataaagacatcgcacatatacccatcactcccagtcttcatctattgattccttcagtgattgactaataattctttgataatttgtggtgcttttgtaacag
 ||||||    ||||  ||||| |||| || |||||||| ||||| || ||||||||||| ||||| || ||| ||||| || | || || |||||||||||      |||  |  ||||   |||    ||||   |  |||     | | |  |  ||                                                                             
CGTTGAAGGAATTCGTATTGTCCTGACCGACGGTGCTGCTCATGCGGTAGATTCCAGTGAGCTTGCTTTCAAGCTGGCTGCTCTGTACGCATTTAGACAGgtaaaacacatccc--ttattgttataaacttttgatagaacacgtgccgttttgctgtctag--------------------------------------------------------------------------

upper sequence: GLYMA01G14800.1 (Glycine max), 5'ss of exon 11
lower sequence: EFJ18610 (Selaginella moellendorffii), 5'ss of exon 16
AGTTGAAAATCTTCGAGTTGTCTTGACAGATGGTGCTGCCCATGCTGTTGATTCCAGTGAACTTGCGTTTAAGTTGGCTTCTATCTATGCTTTTAGACAGgtccttttcatttctgttatccatatttcattttataaagacatcgcacatatacccatcactcccagtcttcatctattgattccttcagtgattgactaataattctttgataatttgtggtgcttttgtaacag
 ||||||    ||||  ||||| |||| || |||||||| ||||| || ||||||||||| ||||| || ||| ||||| || | || || |||||||||||      |||  |  ||||   |||    ||||     || |   ||||||   |  |     | ||                                                                     
CGTTGAAGGAATTCGTATTGTCCTGACCGACGGTGCTGCTCATGCGGTAGATTCCAGTGAGCTTGCTTTCAAGCTGGCTGCTCTGTACGCATTTAGACAGgtaaaacacatcgc--ttattgttataaactttt-----gatagaacacatacctctctgctgtctag---------------------------------------------------------------------