1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGATGACCAGAAGAGAGCTCTTGTGATAGGAGGAGGCATAGCCAACTTTACTGATGTTGCTGCCACATTTAGTGGTATAATTCGGGCATTGAAGGAGAAGgtaagcctatgatcatagagattggttcggatgtatgatgagaatcttcttctagtagttaattgagtgttgagctattgcaattcag
species | Glycine max |
transcript | GLYMA01G03530.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGATNGT-GCTGCCACATTTAGTGGTATAATTCGGGCATTGAAGGAGAAA GAGTCAAAATTGAAAGCAGCAAGGATGCACEST: gi|10844996|gb|BF068185.1|BF068185
genomic: TGAT-GTTGCTGCCACATTTAGTGGTATAATTCGGGCATTGAAGGAGAAGgtaagcctat ... tgcaattcagGAGTCAAAATTGAAAGCAGCAAGGATGCAC
EST: CTGATGTTGCTGCCACATTTAGTGGTATAATTCGGGCATTGAAGGAGAAG GAGTCAAAATTGAAAGCAGCAAGGATGCACATCTTTGTGAGGAGAGGGGGTEST: gi|15813176|gb|BI785451.1|BI785451
genomic: CTGATGTTGCTGCCACATTTAGTGGTATAATTCGGGCATTGAAGGAGAAGgtaagcctat ... tgcaattcagGAGTCAAAATTGAAAGCAGCAAGGATGCACATCTTTGTGAGGAGAGGGGGT
EST: CTGATGTTGCTGCCACATTTAGTGGTATAATTCGGGCATTGAAGGAGAAG GAGTCAAAATTGAAAGCAGCAAGGATGCACATCTTTGTGAGGAGAGGGGGTEST: gi|13787913|gb|BG650505.1|BG650505
genomic: CTGATGTTGCTGCCACATTTAGTGGTATAATTCGGGCATTGAAGGAGAAGgtaagcctat ... tgcaattcagGAGTCAAAATTGAAAGCAGCAAGGATGCACATCTTTGTGAGGAGAGGGGGT
EST: CTGATGTTGCTGCCACATTTAGTGGTATAATTCGGGCATTGAAGGAGAAG GAGTCAAAATTGAAAGCAGCAAGGATGCACATCTTTGTGAGGAGAGGGGGTEST: gi|213607883|gb|DB983852.1|DB983852
genomic: CTGATGTTGCTGCCACATTTAGTGGTATAATTCGGGCATTGAAGGAGAAGgtaagcctat ... tgcaattcagGAGTCAAAATTGAAAGCAGCAAGGATGCACATCTTTGTGAGGAGAGGGGGT
EST: TGATG-TGACAGCCACATTTAGTGGTATAATTCGGGCATTGAAGGAGAAG GAGTCAAAATTGAAAGCAGCAAGGATGCACATCTTTGTGAGGAGAGGGGGA
genomic: TGATGTTG-CTGCCACATTTAGTGGTATAATTCGGGCATTGAAGGAGAAGgtaagcctat ... tgcaattcagGAGTCAAAATTGAAAGCAGCAAGGATGCACATCTTTGTGAGGAGAGGGGG-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGACCAGAAGAGAGCTCTTGTGATAGGAGGAGGCATAGCCAACTTTACTGATGTTGCTGCCACATTTAGTGGTATAATTCGGGCATTGAAGGAGAAGgtaagcctatgatcatagagattggttcggatgtatgatgagaatcttcttctagtagttaattgagtgttgagctattgcaattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA